Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g3105 ATGAACGGCTTAAGAGGTGAAAGAGCTCCTCTTTTGGAGGCTGACCGCGGTTCTAGAAAGGGAAAGAGACAAGATGATTCTACAGCTGATCAACTCGCAGACCTTGAACATGGTGATGCAGTACCGGCTGCACATGTTGGATTCTTTAGAGTGTTTTCACTTGCAAAGCCTGAGGCTGGAAAATTGGTCATTGCTACAATAGCTCTATTAATTGCTGCCACATCAAGTACCTTAGTTCAAAAATTTGGTGGGAAGATAATTGATATTGTCTCAGGAGATATAAGAACTCCTGAGGACAAAGATGCAGCATTAGAAGCTGTCAAGAGCACCATACTAGAAATCTTTATCATCGTTATCCTCGGTTCAATTTGCTCAGCGCTTCGAGCATGGCTTTTTTATACTGCCAGCGAAAGGGTTGTTGCACGCCTGAGGAAGGATTTGTTCAGTCACCTTGTAAACCAGGAAATAGCTTTCTTTGATGTTACACGAACCGGGGAACTTTTAAGTAGGTTATCTGAAGATACACAGATCATTAAGAATGCTGCAACTACCAACCTCTCTGAGGCCTTGAGAAACTTGGCAAGTGCATTTATTGGTCTCAGCTTCATGTTTGCAACATCATGGAAGCTAACATTATTGGCTTTGATTGTTGTACCTCTTATTTCTGTCGGTGTTCGTAAATTCGGTCGTTTCCTGCGTGAACTCTCTCATAAAACTCAAGCTGCAGCTGCATTATCTTCTTCAATTGCTGAGGAATCCTTTGGTGCAATAAGAACAGTTAGATCTTTTGCTCAGGAAGATTATGAAATACAACGATACTCCGAGAAAGTTAACGAGACTTTATCGCTTGGACTTAAACAAGCTAAAGTTGTTGGACTCTTTTCTGGAGGTCTTAATGCAGCATCTACACTTTCAGTTATTATAGTTGTTATATATGGAGCTAATTTGACGATCCAGGGTGCCATGACCTCGGGCGATCTTACATCTTTCATTCTTTATAGTCTCTCAGTTGGATCCTCTATATCTGGTTTGTCGGGATTGTATACTACAGTTATGAAAGCCGCCGGTGCTAGCAGAAGGGTATTTCAACTTTTGGATCGTGCCTCATCCATGCCTAAGGCGGGAGATAAATGTCCTCTAGGTGATCATGATGGGGAAGTGGAACTAGACGATGTATGGTTTTCTTATCCATCACGCCCTAATCATATGGTGCTCAAGGGTATTAATATAAAACTACAACCTGGCTCAAAGGTTGCTCTTGTCGGTCCAAGCGGTGGCGGAAAGACTACAATTGCAAACTTAATTGAAAGATTTTATGACCCAACCAAGGGAAAGATTCTGGTGAATGGTGTTCCTCTGGTAGAAATATCACACAAACATTTACACAGAAAGATCAGTATAGTGAGTCAGGAGCCTACGCTCTTCAACTGTTCCATAGAGGAGAACATAGCTTATGGATTTGATGGCAAAATTGACGACGCTGATATTGAACGAGCAGCTAAAATGGCCAATGCGCATGAATTTATATCAAATTTTCCAGAAAAATACAAGACCCATGTTGGAGAGCGAGGCATACGGCTTTCAGGAGGACAGAAACAGAGAATAGCAATTGCTAGAGCGTTACTTATGGACCCGAAAATTCTCCTACTTGATGAAGCCACCAGTGCCTTAGATGCTGAAAGCGAATACTTAGTGCAGGATGCTATGGATTCTATCATGAAGGGAAGGACAGTTTTAGTCATTGCTCATAGGTTATCAACTGTGAAAACTGCTAATACTGTTGCAGTTGTTTCTGATGGTCAAATAGTCGAGAGTGGTACTCATGACGAGCTTCTCGAAAAGAATGGTGTTTATACTGCATTAGTCAAGAGACAACTACAAACAACAAAAACTGAAGTCTAA 1902 0.4148 MNGLRGERAPLLEADRGSRKGKRQDDSTADQLADLEHGDAVPAAHVGFFRVFSLAKPEAGKLVIATIALLIAATSSTLVQKFGGKIIDIVSGDIRTPEDKDAALEAVKSTILEIFIIVILGSICSALRAWLFYTASERVVARLRKDLFSHLVNQEIAFFDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLASAFIGLSFMFATSWKLTLLALIVVPLISVGVRKFGRFLRELSHKTQAAAALSSSIAEESFGAIRTVRSFAQEDYEIQRYSEKVNETLSLGLKQAKVVGLFSGGLNAASTLSVIIVVIYGANLTIQGAMTSGDLTSFILYSLSVGSSISGLSGLYTTVMKAAGASRRVFQLLDRASSMPKAGDKCPLGDHDGEVELDDVWFSYPSRPNHMVLKGINIKLQPGSKVALVGPSGGGKTTIANLIERFYDPTKGKILVNGVPLVEISHKHLHRKISIVSQEPTLFNCSIEENIAYGFDGKIDDADIERAAKMANAHEFISNFPEKYKTHVGERGIRLSGGQKQRIAIARALLMDPKILLLDEATSALDAESEYLVQDAMDSIMKGRTVLVIAHRLSTVKTANTVAVVSDGQIVESGTHDELLEKNGVYTALVKRQLQTTKTEV* 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g3105 633 PANTHER ABC TRANSPORTER B FAMILY MEMBER 25 3 629 - -
Tpr5g3105 633 Pfam ABC transporter transmembrane region 62 335 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr5g3105 633 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 3 629 IPR039421 -
Tpr5g3105 633 ProSitePatterns ABC transporters family signature. 527 541 IPR017871 GO:0005524
Tpr5g3105 633 SUPERFAMILY ABC transporter transmembrane region 50 367 IPR036640 GO:0005524|GO:0016021
Tpr5g3105 633 Gene3D ABC transporter type 1, transmembrane domain 39 367 IPR036640 GO:0005524|GO:0016021
Tpr5g3105 633 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 378 625 IPR027417 -
Tpr5g3105 633 CDD ABC_MTABC3_MDL1_MDL2 387 625 - -
Tpr5g3105 633 MobiDBLite consensus disorder prediction 9 29 - -
Tpr5g3105 633 Pfam ABC transporter 405 555 IPR003439 GO:0005524
Tpr5g3105 633 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 63 353 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr5g3105 633 SMART AAA_5 414 608 IPR003593 -
Tpr5g3105 633 CDD ABC_6TM_AtABCB27_like 65 361 - -
Tpr5g3105 633 PIRSF ABC_prm/ATPase_B 11 633 - -
Tpr5g3105 633 Gene3D - 381 630 IPR027417 -
Tpr5g3105 633 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 387 624 IPR003439 GO:0005524
Tpr5g3105 633 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g3105 Tpr-Chr5 53840649 53845902 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g3105 48 633 Calmodulin-binding Proteins AT2G36910 33.221 1.85e-94 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g3105 - - var:108320153 1056.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g3105 5 53840649 53845902 Tpr5g3105 5 53840649 53845902 ECH