Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g3093 ATGGGCGCGGATGATAAAAGCCAACAAGTGAAAGCAATTATTCAATTCCAGAAGTTTCAGGAGCTTCTTTCGAATGAACGCAGCCCTCCTGCTGAGAAAGTTATTGAGAAATTTATTCAATGTGGTGTTGTTCCTCAATTTGTTAAATTTCTAGCCATGGATGATATCCCTCAAATTCAGTATATGGCTGCTTGGATACTCGCATACATAGCATCTGGAACTTCTAAGCACACTAAGGTGGTAATTGATCATGGTGCAGTGCCGATATTTGTCAAGCTACTTAGTTCACCTAATCATCTTGTTCGCGAACAGGCTGTGTGGGCATTGGGAAACGTTGCCGGTGATTCCCCTAGGTGCCGTGATCTTGTTCTCAGTCATGGTGCCCTGATCCCGCTGTTATCTCAGTTGAATGAGCAAGCAAAGCTTTCTATGCTGAGAGATGCCATGTGGACCCTTTTAAACTTTCTCAGCGGAAAGCCACAACCCCAATTTGAGGAGGTGAGGCCAGTCCTTCCCGCTCTCCAGCATTTGCTTTTTTCCAATGATGAAGAAGTCCTGACGGAGACATGCTGGGCACTCTCATTTCTTTCTGATGGATCAAGTGACAAAATCCAAGCCGTGATTGACGCAGGTGTATGTGGCAGACTGGTGCAGCTCCTTCTGCACCCATCTCCTTCAGTGCTGATTCCTGCACTTCGTACCGTGGGAAATATTGTAACTGGAGACCATATGCAGACTCAGGCTGTTATCAATCATGGTTCACTCCCATGCCTTTTGAGCCTGTTGACCCATAATCACGACAAAAGTATTCAGATAGAGGCTTGCTGGACTATAGCTAACATCACAGCTGGAAACACAGAGCAGATACAGGCAGTTATTGAAGCTGGTCTGATTGCTTCCCTAGTCAATCTCTTTCAAAATGCCGAGTTTGACATTAAAAAAGAAGCTGCATGTGCATTCTATAATGCTTCATCCGGCGGTACCAATGAGCAAATAAAGTACTTGGTGAGCCAGGGTTGCATTAAGCCTCTGTGTGATTTGCTTCTTTGCCCTGATCCAAAAATTGTTACTATCTGTTTAGAAGGTCTTGAGAATTTTCTGAAAGTTGGAAAAGCGGAGAAAAGCTTTGGTAACACGGGAGATGATGTCAACTTGTATGCTCAGATGATAGATGATGCTGAGGGATTGGAAAAGATTGAAAAATTGCAGTGTCATGACAACAATGAAATTTATGAGAAGGCTGTTAAAATTCTCGAGACATATTATTTGTTGGAAGACGAAGACGAGGATGCTATCTCCGGGCAATGA 1308 0.4373 MGADDKSQQVKAIIQFQKFQELLSNERSPPAEKVIEKFIQCGVVPQFVKFLAMDDIPQIQYMAAWILAYIASGTSKHTKVVIDHGAVPIFVKLLSSPNHLVREQAVWALGNVAGDSPRCRDLVLSHGALIPLLSQLNEQAKLSMLRDAMWTLLNFLSGKPQPQFEEVRPVLPALQHLLFSNDEEVLTETCWALSFLSDGSSDKIQAVIDAGVCGRLVQLLLHPSPSVLIPALRTVGNIVTGDHMQTQAVINHGSLPCLLSLLTHNHDKSIQIEACWTIANITAGNTEQIQAVIEAGLIASLVNLFQNAEFDIKKEAACAFYNASSGGTNEQIKYLVSQGCIKPLCDLLLCPDPKIVTICLEGLENFLKVGKAEKSFGNTGDDVNLYAQMIDDAEGLEKIEKLQCHDNNEIYEKAVKILETYYLLEDEDEDAISGQ* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g3093 435 PANTHER IMPORTIN ALPHA 5 430 - -
Tpr5g3093 435 SMART arm_5 328 368 IPR000225 GO:0005515
Tpr5g3093 435 SMART arm_5 200 240 IPR000225 GO:0005515
Tpr5g3093 435 SMART arm_5 242 283 IPR000225 GO:0005515
Tpr5g3093 435 SMART arm_5 74 114 IPR000225 GO:0005515
Tpr5g3093 435 SMART arm_5 159 198 IPR000225 GO:0005515
Tpr5g3093 435 SMART arm_5 30 72 IPR000225 GO:0005515
Tpr5g3093 435 SMART arm_5 115 157 IPR000225 GO:0005515
Tpr5g3093 435 SMART arm_5 285 325 IPR000225 GO:0005515
Tpr5g3093 435 PIRSF Importin_alpha 1 435 IPR024931 GO:0005737|GO:0006606|GO:0061608
Tpr5g3093 435 Pfam Atypical Arm repeat 384 430 IPR032413 -
Tpr5g3093 435 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 253 296 IPR000225 GO:0005515
Tpr5g3093 435 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 85 127 IPR000225 GO:0005515
Tpr5g3093 435 PANTHER IMPORTIN SUBUNIT ALPHA 5 430 - -
Tpr5g3093 435 Pfam Armadillo/beta-catenin-like repeat 328 365 IPR000225 GO:0005515
Tpr5g3093 435 Pfam Armadillo/beta-catenin-like repeat 244 283 IPR000225 GO:0005515
Tpr5g3093 435 Pfam Armadillo/beta-catenin-like repeat 39 72 IPR000225 GO:0005515
Tpr5g3093 435 Pfam Armadillo/beta-catenin-like repeat 75 113 IPR000225 GO:0005515
Tpr5g3093 435 Pfam Armadillo/beta-catenin-like repeat 200 239 IPR000225 GO:0005515
Tpr5g3093 435 Pfam Armadillo/beta-catenin-like repeat 285 324 IPR000225 GO:0005515
Tpr5g3093 435 Gene3D - 1 423 IPR011989 -
Tpr5g3093 435 SUPERFAMILY ARM repeat 16 427 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g3093 Tpr-Chr5 53741674 53747241 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g3093 57 317 U-box Gene Family AT3G46510 23.282 4.62e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g3093 K15042 - gmx:100808498 643.269