Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g3092 ATGGCAAAATCAATCTCCCCAAACGCCATCTCCACCGTACTTTCAAATCCATCTCCAGATTCTTCATCAGATCTTCCTGATATCGTTGTTCAAATTCTCGATCTCAAACAAAACGGCAACAGATACATGTGTTTTGTGAGTGATGGAAAGATGAAATTAAGAGCAATTCTTCCTTCAAGTCAGTTTTCAGATGTGCTTTCTGGAAAGATTCAGAACCTCGGTCTCATTCGTATTGTTGATTATACTCTTAATGACATTCCGAACAAGCCTGATAAGTATCTAATTGTTACAAAGTGTGAAGCGGTTTCTCCTGCGCTTGAAATGGAGATAAAGAGTGAACCAACTGGTATCACTTTGAAGCCTAAGGAAGATGTTGTAGTCAAGACTGAAGGTGTTGCTGGTTTTGTTCTAAAGCCGAAGCAGGATGTTGTTTCAAAATCTGCTGCTCAGATTGTGCGTGAGCAACATGCTAATTCTGCTCCTGCGAGACTGGCTATGACGCGTAGGGTGCGTCCTCTTGTTTCTTTGAATCCTTATATGGGTGGTTGGACAATCAAGGTCAGTGTTACCAGCAAAGGAACAATGCGTACCTATAAGAATGCTAGAGGAGAAGGTTGTGTATTCAATGTTGAATTGACTGATGAAGATGGTACTCAGATTCAAGCAACTATGTTTAATGATGCTGCTAGGAAGTTTTTTGACAAATTTGTTATGGGAAAGGTTTATTATATTTCAAAGGGTACTTTGAAAGTTGCTAACAAACAGTTTAAAACTGTGGCAAATGATTATGAGATGACACTGAATGAGAATTCTGAGGTGGAAGAGGTTCCTGAAGAAGCTGGGTTTGTTCCAGAGACAAAATTCAGTTTTGTCCCAATTGATCAATTGGGTCCTCATGTCAATAAGCCTGATCTTGTTGATGTTGTTGGAGTTGTTAAGAGTGTGTCTTCAACGATGAGCATCAGAAGGAAGAGCAACAATGAGAGTGTTGCAAAGCGTGACATTACTATTGCTGATGAAAGCAAAAAGACAGTTATTGTGTCTTTGTGGGGTGATCTTGCAACTAACATAGGACAAGAGTTACTTGACATTGCTGATAAATCCCCAGTAGTTGCAATCAAATCCCTCAAAGTTGGGGACTTTCAAGGTGTTTCATTGTCAGCTATAAGCAAAAGTTTAGTTCTGATTGATCCAGAAGTACCTGAAACTCAGAAGCTCAGATCCTGGTATGATTCTGAAGGCAAGGATACTGCAATGGCTGCTTTAAGCTCTGGTTCAATTCCATCCAACAGTGGAAACAGATCTGTGTACTCTGATCGTGTTACACTTTCTCATATAACCTCTAACCCCTCCTTGGGAGCTGAGAAGCCTGCATTTTTTAGCATTAGAGGATACATAAGTTTCATAAAGGCAGATCAGGCAATGTGGTATCGTGCCTGTAAGACTTGCAATAAGAAAGTTACTGAAAGCACTGGCGCTGGTTACTGGTGTGAAAGTTGCCAGAAAAATGACGAAGAATGCAATTTAAGATATATCATGGTTGTAAAAGTTACTGATGCAAGTGGCGAGGCTTTTATATCAACCTTTAACGAGGAAGCTGAGAAGATCATTGGTTGCTCTGCTGATGAGCTAGACAGCCTTAGATCACAGGAGGGAGAAGATAGTCCTTATCAACTGAAATTGAAGCAAGCTACATGGACTCCACACCTCTTGAGGGTTAGTGTTTCTCAGAATGAGTATAATAATGAGAAGCGGCAAAGGATAACTGCAAGGGCTGTTGTTCCTGTTGACTATGCTGTGGAGTCCAGAAATCTCCTTGAAAACATATCAAAGATGGGAGTCTCTCAATAA 1851 0.4046 MAKSISPNAISTVLSNPSPDSSSDLPDIVVQILDLKQNGNRYMCFVSDGKMKLRAILPSSQFSDVLSGKIQNLGLIRIVDYTLNDIPNKPDKYLIVTKCEAVSPALEMEIKSEPTGITLKPKEDVVVKTEGVAGFVLKPKQDVVSKSAAQIVREQHANSAPARLAMTRRVRPLVSLNPYMGGWTIKVSVTSKGTMRTYKNARGEGCVFNVELTDEDGTQIQATMFNDAARKFFDKFVMGKVYYISKGTLKVANKQFKTVANDYEMTLNENSEVEEVPEEAGFVPETKFSFVPIDQLGPHVNKPDLVDVVGVVKSVSSTMSIRRKSNNESVAKRDITIADESKKTVIVSLWGDLATNIGQELLDIADKSPVVAIKSLKVGDFQGVSLSAISKSLVLIDPEVPETQKLRSWYDSEGKDTAMAALSSGSIPSNSGNRSVYSDRVTLSHITSNPSLGAEKPAFFSIRGYISFIKADQAMWYRACKTCNKKVTESTGAGYWCESCQKNDEECNLRYIMVVKVTDASGEAFISTFNEEAEKIIGCSADELDSLRSQEGEDSPYQLKLKQATWTPHLLRVSVSQNEYNNEKRQRITARAVVPVDYAVESRNLLENISKMGVSQ* 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g3092 616 Gene3D - 169 278 IPR012340 -
Tpr5g3092 616 CDD RPA1_DBD_A 172 275 - -
Tpr5g3092 616 Pfam Replication factor-A C terminal domain 459 605 IPR013955 -
Tpr5g3092 616 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 3 611 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tpr5g3092 616 SUPERFAMILY Nucleic acid-binding proteins 1 108 IPR012340 -
Tpr5g3092 616 Pfam OB-fold nucleic acid binding domain 184 264 IPR004365 GO:0003676
Tpr5g3092 616 Gene3D - 4 117 IPR012340 -
Tpr5g3092 616 SUPERFAMILY Nucleic acid-binding proteins 288 415 IPR012340 -
Tpr5g3092 616 SUPERFAMILY Nucleic acid-binding proteins 438 612 IPR012340 -
Tpr5g3092 616 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-RELATED 5 610 - -
Tpr5g3092 616 CDD RPA1_DBD_C 443 611 IPR013955 -
Tpr5g3092 616 Gene3D - 424 612 IPR012340 -
Tpr5g3092 616 PANTHER REPLICATION FACTOR A 1, RFA1 5 610 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tpr5g3092 616 CDD RPA1_DBD_B 312 411 - -
Tpr5g3092 616 Pfam Replication protein A OB domain 299 396 IPR031657 -
Tpr5g3092 616 Pfam Replication factor-A protein 1, N-terminal domain 5 103 IPR007199 GO:0003677|GO:0005634|GO:0006260
Tpr5g3092 616 SUPERFAMILY Nucleic acid-binding proteins 171 280 IPR012340 -
Tpr5g3092 616 Gene3D - 283 423 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g3092 Tpr-Chr5 53736965 53740219 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g3092 1 616 Core DNA Replication Machinery Family AT5G08020 67.044 0.0 872
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g3092 K07466 - qsu:112017680 910.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g3092 5 53736965 53740219 Tpr5g3092 5 53736965 53740219 ECH