Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g3090 ATGGCTTTCTTTGGTAAACTTGGGAACATTCTAAGACAAACTGCTAACAGGAACATTGTTTCCGAATTGCGTTCGTCCCCATCTGCTTTCCAGGCTATAAGATGCATGTGTTCTGCTCCATCTACAAAGCTGTTTGTTGGGGGTATTTCGTTTTCAACCGATGAACAAGGTTTGAGGGATGCTTTTTCGAAATATGGTCAAGTTCTTGATGCAAGGATCATTAATGATCGTGAAACTGGTAGATCGAGAGGATTTGGCTTTATCACATACAGTTCAGTTGAGGAGGCATCTAGTGCCATTCAGGCCTTGGATAGTCAGGAGCTTCATGGTCGTCGGGTCAGAGTAAATTATGCTAATGAAAGGCCCCCCCGTGCATATGGCGGCGGCGGTGGTTCTTATGGCAATGCATCATATGGTGGTGGAGGTGGGTATGGAGGCCCTCAATATGGTGGTGGCTATGGTGGAAATGTAGATGGAGGTTATCGGGATGGTGGATATGGCAGAGACAACTATGGGCCAGGTGGTAATTATGGAGGTAATGATGCTGCCAATACCTATTCTGCTCCTAACAGTTTTGAAACTAACAATACTGGTGGGGGGTTGGAATATGGCAGCAGTGGCCAATTTGATATCAACAATGTAAAAGAGGATTTAGGAGGTGTTGGGGACTCGATCGAAGGAAATTATAGGGATGACGGTGATGACAATGATGATTTTGCCAAAAGGGCCTGA 732 0.4536 MAFFGKLGNILRQTANRNIVSELRSSPSAFQAIRCMCSAPSTKLFVGGISFSTDEQGLRDAFSKYGQVLDARIINDRETGRSRGFGFITYSSVEEASSAIQALDSQELHGRRVRVNYANERPPRAYGGGGGSYGNASYGGGGGYGGPQYGGGYGGNVDGGYRDGGYGRDNYGPGGNYGGNDAANTYSAPNSFETNNTGGGLEYGSSGQFDINNVKEDLGGVGDSIEGNYRDDGDDNDDFAKRA* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g3090 243 SUPERFAMILY RNA-binding domain, RBD 38 132 IPR035979 GO:0003676
Tpr5g3090 243 MobiDBLite consensus disorder prediction 214 243 - -
Tpr5g3090 243 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 120 IPR000504 GO:0003723
Tpr5g3090 243 SMART rrm1_1 43 116 IPR000504 GO:0003723
Tpr5g3090 243 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL 1 242 - -
Tpr5g3090 243 Gene3D - 12 138 IPR012677 -
Tpr5g3090 243 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 242 - -
Tpr5g3090 243 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 114 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g3090 Tpr-Chr5 53723665 53726520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g3090 41 165 Eukaryotic Initiation Factors Gene Family AT4G34110 28.289 1.65e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g3090 K12741 - gmx:100782808 204.527