Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g3087 ATGGCATCGGCGAAGCGATGCCATTACGAAGTTCTCGGTATCTCTCGCGACTGTTCACCGGACGAAATCCGATCATGTTACCGGAAACTCGCCCTCCAACGCCACCCAGACAAGCTCGTCAAATCAGGCCTATCTCAATCCGAAGCCACCGCTCAATTTCAGGAGCTACAACATGCTTACGAGGTTCTCTCTGATCCAAAAGAACGCGCTTGGTATGATTCTCACCGTTCTCAAATCCTCTTCTCCGATCCAAATTCTCATTCTAATTCCGTTGTACCTGACCTTTTCTCGTTTTTCTCAAACACTGTGTTTTCTGGTTATTCCGATTCCGGTAAGGGTTTTTACAAGGTTTATTGTGATGTGTTTGATAAAATTCAGGCGAATGAGATTAATTTTGCTAAGAAATTAGGTATTGGAATTGATTCTGTTAAACAAGCTCCTCTTATGGGGAATTTGGATAGTCCTTATGCTCAGGTTACCGCTTTTTATAGTTATTGGTTGGGATTTTCGACGGTTATGGATTTTTGTTGGGTGGATGAGTATGATGCGATGGCTGGTCCGAATAGGAAATCACGGAGGTTGATGGAGGAAGAGAATAATAAGGTGAGGAGGAAGGCTAAGAGGGAGTATAATGATACTGTGAGGAGGTTGGCTGATTTTGTGAAGAAGAGGGATAAGAGAGTGATTGATATGAAGGTGAAGAAGAATTTGGAGGAAGAGAAGAAGAAAGAGGAGGAGAAAGAGAGGAAGAGGAAGTTGGAGTTGGAGAAGAAGGAGAGGGCTATGGCTTATGAGGAGCCTGATTGGGCTAAGGTTGATGAGGAAGAGGATTTGTTTGAGGATGATGAGTTTGAGGAGAAGAAAGATGAGAAGGAGTTTTATTGTGTGTTGTGTGGAAAGAAGTTTAAGAGTGAGAAGCAATGGAAGAATCATGAGCAGTCGAAGAAACATAAGGAGAAAGTTGCTGAGTTTAAGGATTCGCTTGATGATGAAGAGGAGTTAAAAGCCGAGTTGGATGAGGAAAGTGAAATTGAAAGAGAAGGAGCTGGAGAGGAGAGATTAGCAAGTGAGGAGGATGGATTTGAGGTTGATGATTTGGAGGAGAGGAATCGAGATGGTCTTAATGTTGCAGAAGAGGATGCAAATGGGGTTGAACTGAATGATGATGGTGACGATGATGAATTTTTTGATGCGGCAAATGCAAAAGAGGGAGAGGAGGCTGGTGTATCAGTTGATTTTGATGTTAATGACGACAACGATGATGATGAAGATGGTGAAAATGATGTTCTTGAAACAACGGTGTTTGGGCACAGGGGCAGAGTTGATTTTGACGAGAATGAAGATGAAGGTGATGAAACTGATATTCTTGAAGCAATGTTGGCTGGGCGCAAGAGCAGAAAATCTGGTGCTTCAATACACAAGCCCACAGCTTCTGTAACTCCAGCTCAAATTGATAGTGAGAATGAGAACGATGGGGTTGGTGCTATGGAATATAACAACCGAAAGCCCACAAGAAAGAAACGTAGAGCCAAGAAAGAGAAGGGTGGCAAAAATGGGGATGGTTCTTGTGTGCCTGAAAATGGCAAACATGAAAATATGAACAGTAATGGAAATGACGATTCCTATGCACAAGAGTCTAGTTCTCAAAATTTCGACGAAATTGGTGGTAAAGAAAATGAGCAGGTGGGTAGAGATAAGAAGATTTCAAATCAACCTGTTGATAAAAAAGGAACTTCAAAGGACACAAAGTCCAAAGCAAAAATTTCATCCAAAGGAAAAAAGGCAAAGAATACTTCGAAGAATCTTGGCCATTTTTGTGAGACGTGTGAAATGGAGTTTGAATCAAGGAATAAATTACATAAGCATCTGGGTGAGTCTGGGCATGCGGCAATTAAAGGTCGATAA 1905 0.4194 MASAKRCHYEVLGISRDCSPDEIRSCYRKLALQRHPDKLVKSGLSQSEATAQFQELQHAYEVLSDPKERAWYDSHRSQILFSDPNSHSNSVVPDLFSFFSNTVFSGYSDSGKGFYKVYCDVFDKIQANEINFAKKLGIGIDSVKQAPLMGNLDSPYAQVTAFYSYWLGFSTVMDFCWVDEYDAMAGPNRKSRRLMEEENNKVRRKAKREYNDTVRRLADFVKKRDKRVIDMKVKKNLEEEKKKEEEKERKRKLELEKKERAMAYEEPDWAKVDEEEDLFEDDEFEEKKDEKEFYCVLCGKKFKSEKQWKNHEQSKKHKEKVAEFKDSLDDEEELKAELDEESEIEREGAGEERLASEEDGFEVDDLEERNRDGLNVAEEDANGVELNDDGDDDEFFDAANAKEGEEAGVSVDFDVNDDNDDDEDGENDVLETTVFGHRGRVDFDENEDEGDETDILEAMLAGRKSRKSGASIHKPTASVTPAQIDSENENDGVGAMEYNNRKPTRKKRRAKKEKGGKNGDGSCVPENGKHENMNSNGNDDSYAQESSSQNFDEIGGKENEQVGRDKKISNQPVDKKGTSKDTKSKAKISSKGKKAKNTSKNLGHFCETCEMEFESRNKLHKHLGESGHAAIKGR* 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g3087 634 MobiDBLite consensus disorder prediction 528 555 - -
Tpr5g3087 634 MobiDBLite consensus disorder prediction 305 331 - -
Tpr5g3087 634 ProSitePatterns Zinc finger C2H2 type domain signature. 606 628 IPR013087 -
Tpr5g3087 634 ProSitePatterns Nt-dnaJ domain signature. 53 72 IPR018253 -
Tpr5g3087 634 ProSiteProfiles dnaJ domain profile. 7 76 IPR001623 -
Tpr5g3087 634 MobiDBLite consensus disorder prediction 410 429 - -
Tpr5g3087 634 MobiDBLite consensus disorder prediction 305 601 - -
Tpr5g3087 634 MobiDBLite consensus disorder prediction 557 588 - -
Tpr5g3087 634 MobiDBLite consensus disorder prediction 382 399 - -
Tpr5g3087 634 CDD DnaJ 7 65 IPR001623 -
Tpr5g3087 634 PANTHER DNAJ PROTEIN JJJ1 HOMOLOG 1 634 IPR044648 -
Tpr5g3087 634 MobiDBLite consensus disorder prediction 471 487 - -
Tpr5g3087 634 Coils Coil 314 341 - -
Tpr5g3087 634 Gene3D DnaJ domain 1 91 IPR036869 -
Tpr5g3087 634 SMART c2h2final6 604 628 IPR013087 -
Tpr5g3087 634 SMART c2h2final6 293 317 IPR013087 -
Tpr5g3087 634 SUPERFAMILY beta-beta-alpha zinc fingers 285 334 IPR036236 -
Tpr5g3087 634 PRINTS DnaJ domain signature 9 27 IPR001623 -
Tpr5g3087 634 PRINTS DnaJ domain signature 27 42 IPR001623 -
Tpr5g3087 634 PRINTS DnaJ domain signature 48 68 IPR001623 -
Tpr5g3087 634 Coils Coil 228 261 - -
Tpr5g3087 634 ProSitePatterns Zinc finger C2H2 type domain signature. 295 317 IPR013087 -
Tpr5g3087 634 SUPERFAMILY Chaperone J-domain 4 105 IPR036869 -
Tpr5g3087 634 MobiDBLite consensus disorder prediction 430 444 - -
Tpr5g3087 634 ProSiteProfiles Zinc finger C2H2 type domain profile. 293 322 IPR013087 -
Tpr5g3087 634 MobiDBLite consensus disorder prediction 332 346 - -
Tpr5g3087 634 Gene3D Classic Zinc Finger 282 341 - -
Tpr5g3087 634 SMART dnaj_3 6 68 IPR001623 -
Tpr5g3087 634 SMART ZnF_U1_5 290 324 IPR003604 GO:0003676|GO:0008270
Tpr5g3087 634 Pfam Zinc-finger double-stranded RNA-binding 293 318 IPR022755 -
Tpr5g3087 634 Pfam DnaJ domain 8 73 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g3087 Tpr-Chr5 53709952 53712928 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g3087 3 383 C2H2 Transcription Factor Family AT1G74250 64.806 4.09e-163 479
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr5g3087 DnaJ 7e-22 CL0392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g3087 K09506 - gmx:100788305 757.288