Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g3077 ATGGTAAAGAAGATCTGTGGAATTGGAGCTGGATATGTAGGAGGTCCAACAATGGCTGTAATAGCCCTCAAATGTCCTTCAATTGAAGTAGCTGTTGTTGACATTTCCCACTCTCGCATATCAGCTTGGAATAGCGACAAACTCCCTATCTATGAGCCTGGCCTAGAACAAGTTATACAACAATGTAGAGGAAAGAATCTCCACTTCAGCACTGATGTAGAAAAGCATGTTTATGAAGCTGATATAATCTTTGTTAATGTTAACACACCAACAAAAACAAGTGGCCTTGGAGCTGGCAAAGCCGCAGATTTAACTTATTGGGAAAGTGCAGCTCGAGTGATAGCCGATGTTTCAAGATCAAACAAAATTGTTGTTGAGAAATCAACTGTTCCAGTTAGAACAGCTGAAGTAATTGAAAAGATTCTAGTCCACAATAGCAATGGCAAGATCAAGTATCAAATTTTGTCAAATCCTGAATTTCTTTCCGAAGGAACTGCTATGCAGGATCTTCTAAATCCTGACAGGGTTCTACTCGGAGGAAATGATAGTCTTGAAGGTCAAGAAGCAATTCAAAAATTGAAAGATATATATGCTCATTGGGTGCCTCAAGACAGAATCATAACTACCAATCTTTGGTCTGCTGAACTCTCAAAGTTAGCTGATAATGCTTTTTTGGCACAAAGGATTTCATCTATCAATGCCATGTCGGCGTTATGTGAGGCTACTGGTGCTGATGTTTCACAGGTTTCTTGTGTTTTAAGCAAAAACACTAAACTTGGTTCTAAATACTTAAATGCTAGCGTTGGTTTTGGCGGGTCTTGTTTTCAAAAAGATATACTTAACTTGGTTTATATATGCGAGAGTAATGGACTATTTGAAGTGGCTAATTATTGGAAAGAGGTAGTTAAGGTGAATGATTACCAAAAGAGTAGGTTTGTGAAAAAAGTTGTAACATCTATGTTCAATACAGTTTCAGGTAAGAAGATTGCTGTTCTAGGATTTTCCTTTAAGAAAGATACTAGTGATACTAGAAAAACTCCTGCGATCGATGTTTGCAAAGGTCTTTTAGCGGATAATGCTTGTTTGAGCATTTATGATCCGCGTGTTAGTGAAGAACAGATCCGAAGAGATTTGTCTATGAATGAGAGTCATTGGGATCATTCAATTCAGGCGAAGTCAACGAGTTTCACTAGCGCGAAACAGGTTAGTGTTTTCGCGGATGTTTACGAAGCTACTAAAGATGCTCATGGGATATGTGTTCTTACAGAATGGGATGAGTTTAAGACAATTGATTATCATAAAGTATTTGATAGTATGGTGAAACCGGCATTTGTTTTCGATGGTAGAAATGTTTTGGATGTTGATAAGTTGAGGGAGATTGGATTTATTGCATACTCGATTGGGAAGCCATTAAACCAGTGGGTGAATTGCTAG 1434 0.3808 MVKKICGIGAGYVGGPTMAVIALKCPSIEVAVVDISHSRISAWNSDKLPIYEPGLEQVIQQCRGKNLHFSTDVEKHVYEADIIFVNVNTPTKTSGLGAGKAADLTYWESAARVIADVSRSNKIVVEKSTVPVRTAEVIEKILVHNSNGKIKYQILSNPEFLSEGTAMQDLLNPDRVLLGGNDSLEGQEAIQKLKDIYAHWVPQDRIITTNLWSAELSKLADNAFLAQRISSINAMSALCEATGADVSQVSCVLSKNTKLGSKYLNASVGFGGSCFQKDILNLVYICESNGLFEVANYWKEVVKVNDYQKSRFVKKVVTSMFNTVSGKKIAVLGFSFKKDTSDTRKTPAIDVCKGLLADNACLSIYDPRVSEEQIRRDLSMNESHWDHSIQAKSTSFTSAKQVSVFADVYEATKDAHGICVLTEWDEFKTIDYHKVFDSMVKPAFVFDGRNVLDVDKLREIGFIAYSIGKPLNQWVNC* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g3077 477 SUPERFAMILY UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 315 465 IPR036220 -
Tpr5g3077 477 PANTHER UDP-GLUCOSE 6-DEHYDROGENASE 3 3 476 - -
Tpr5g3077 477 TIGRFAM NDP-sugDHase: nucleotide sugar dehydrogenase 4 450 IPR017476 GO:0016616
Tpr5g3077 477 Gene3D - 211 242 - -
Tpr5g3077 477 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 212 311 IPR008927 -
Tpr5g3077 477 Pfam UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 4 186 IPR001732 GO:0016616|GO:0051287
Tpr5g3077 477 Pfam UDP-glucose/GDP-mannose dehydrogenase family, central domain 212 306 IPR014026 GO:0016616|GO:0051287
Tpr5g3077 477 Gene3D - 1 210 - -
Tpr5g3077 477 Gene3D - 243 477 - -
Tpr5g3077 477 SMART UDPG_MGDP_dh_C_a_2_a 330 454 IPR014027 GO:0016616|GO:0051287
Tpr5g3077 477 PIRSF UDPglc_DH_euk 1 477 IPR028356 GO:0003979
Tpr5g3077 477 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 216 IPR036291 -
Tpr5g3077 477 PIRSF UDPglc_GDPman_dh 3 469 IPR017476 GO:0016616
Tpr5g3077 477 Pfam UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 330 453 IPR014027 GO:0016616|GO:0051287
Tpr5g3077 477 PANTHER UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE 3 476 IPR028356 GO:0003979
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g3077 Tpr-Chr5 53609851 53612927 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g3077 K00012 - gmx:100781197 798.505
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3088 6 33478156 33480932 Tpr5g3077 5 53609851 53612927 ECH
Tpr5g3077 5 53609851 53612927 Tpr5g3077 5 53609851 53612927 ECH