Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g3076 ATGGAAGAAAAATCAAAATATCAAATTCAAGAATTCAAACATGCTTGCAAATTCTGTAACAAAAGCTTCCCTTGTGGAAGATCTTTAGGTGGTCACATGAGGTCTCATATCAACAACTTATCATCTGAAAAAACAGAACAGAAAGAAAAAGTTTCAATCAAAATCAACAATGGAAGTTGCATTGATCATTCTGGTAGCTATGGTTTAAGAGAGAATCCAAAGAAGACATGGAGAAAGAGAGTTGCTGAATCAAGTGAAGATAGTTATGTGTATGATAAATTCTGCAAAGAGTGTGGAAAATGTTTTCAGTCATGGAAAGCTTTGTTTGGTCATATGAAGTGTCATTCTGATCAGAAAGAAAGAGTTTTTGATGATAGTTTGGAAGATCAAGATTCATGGACTAATAATGCTAAAGATGTTGAATCAGATAATGAAATTACTGCTCCAAGAAGAAAAAGAAGATCAAAGAGAACAAGAACAAGGTATAATAACATGGTAGGTTCTTCTACTGCTGCAACTGTTACAACTGCTACAACTTCTTCTTCTGTTTCTGAAGTTGAACATGAGCAAGAAGAAGTTGCTATAAGCTTGATTATGCTTAGTAGAGATGTTAGTCCTTGGAGTGGTTTTGCTGAATCATCTGATAATAATTCTGTTTACTTCGAAGCTCGATCTTCTGTTCGAACTAATCTTGTTACTAAATTCGATGCGAAAAACAAGAATTTTAGTACTACTACTACTGTTGCTGCTGCTGCTGCTGCTACTTCTACTATCAATATTGCAAAGTTGATGAAGCAAAGTGAGAAGAAGAGTTCTGTTTCCAAAAAGTTAAACTTCAAAGGAAAAAGTTTAGAGATTTTGGATACTGAAAAAGGATTCAAGATGAACAAAACTGGAGTTTCCATTAAAGGGTTTCTGAAATCAACAAAATCTGAGCTTGATTATGTGTCTACATTGGAAGATTCGGAAGTCGAAAATGGGAAAAGCAGAGTCAATGGAACAGAATCAGCTATGAACATGGGTGATCATGAAGATGAATTCATCAAGAATTTTCATAAGAGAGGGAAATTTGAGTGTACTACTTGTAACAAAATTTTCCATTCATATCAAGCTCTTGGAGGACATAGAGCAAGTCATAAAAAGACTAAAGGGTGTTTTGCTTCAAAGATTGAGAGTAGTGAAAACAGCATTGAATTTGTAGAAACTGATCTATCTCATGAACCAATAACTGAAAGCAAGGTCATGAAGATTAGTGATAACAACATTGAATATGTTCAAAATATGAAGATCAAAGGTCATCATGAGTGTCCAATTTGCTTTAAGGTTTTTCAATCTGGTCAAGCTTTAGGTGGACATAAAAGATCTCATATGGTTGTTGCTGCTACTGCTTCTGAGAGTAGAGTTTTAGTTCAAGAACAAGTTCCACAGATTAGGGACTTTCTTGATCTTAATCTACCTGCTTCTACTGAGGAAGAAAGTAATAGTCATGCTGATTCTAATAGACCTTGGTGGATTGTTGAAGGAAATCAACAAGAGGCACTTGTAGGGTAG 1551 0.3482 MEEKSKYQIQEFKHACKFCNKSFPCGRSLGGHMRSHINNLSSEKTEQKEKVSIKINNGSCIDHSGSYGLRENPKKTWRKRVAESSEDSYVYDKFCKECGKCFQSWKALFGHMKCHSDQKERVFDDSLEDQDSWTNNAKDVESDNEITAPRRKRRSKRTRTRYNNMVGSSTAATVTTATTSSSVSEVEHEQEEVAISLIMLSRDVSPWSGFAESSDNNSVYFEARSSVRTNLVTKFDAKNKNFSTTTTVAAAAAATSTINIAKLMKQSEKKSSVSKKLNFKGKSLEILDTEKGFKMNKTGVSIKGFLKSTKSELDYVSTLEDSEVENGKSRVNGTESAMNMGDHEDEFIKNFHKRGKFECTTCNKIFHSYQALGGHRASHKKTKGCFASKIESSENSIEFVETDLSHEPITESKVMKISDNNIEYVQNMKIKGHHECPICFKVFQSGQALGGHKRSHMVVAATASESRVLVQEQVPQIRDFLDLNLPASTEEESNSHADSNRPWWIVEGNQQEALVG* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g3076 516 ProSiteProfiles Zinc finger C2H2 type domain profile. 93 120 IPR013087 -
Tpr5g3076 516 SUPERFAMILY beta-beta-alpha zinc fingers 11 39 IPR036236 -
Tpr5g3076 516 SMART c2h2final6 434 456 IPR013087 -
Tpr5g3076 516 SMART c2h2final6 14 36 IPR013087 -
Tpr5g3076 516 SMART c2h2final6 93 115 IPR013087 -
Tpr5g3076 516 SMART c2h2final6 357 379 IPR013087 -
Tpr5g3076 516 ProSiteProfiles Zinc finger C2H2 type domain profile. 357 384 IPR013087 -
Tpr5g3076 516 Pfam C2H2-type zinc finger 95 117 - -
Tpr5g3076 516 Pfam C2H2-type zinc finger 14 36 - -
Tpr5g3076 516 Pfam C2H2-type zinc finger 357 381 - -
Tpr5g3076 516 Pfam C2H2-type zinc finger 433 457 - -
Tpr5g3076 516 ProSitePatterns Zinc finger C2H2 type domain signature. 16 36 IPR013087 -
Tpr5g3076 516 ProSiteProfiles Zinc finger C2H2 type domain profile. 14 41 IPR013087 -
Tpr5g3076 516 Gene3D Classic Zinc Finger 354 456 - -
Tpr5g3076 516 Gene3D Classic Zinc Finger 11 115 - -
Tpr5g3076 516 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 1 516 - -
Tpr5g3076 516 ProSitePatterns Zinc finger C2H2 type domain signature. 95 115 IPR013087 -
Tpr5g3076 516 MobiDBLite consensus disorder prediction 134 160 - -
Tpr5g3076 516 MobiDBLite consensus disorder prediction 134 150 - -
Tpr5g3076 516 ProSitePatterns Zinc finger C2H2 type domain signature. 436 456 IPR013087 -
Tpr5g3076 516 ProSiteProfiles Zinc finger C2H2 type domain profile. 434 456 IPR013087 -
Tpr5g3076 516 ProSitePatterns Zinc finger C2H2 type domain signature. 359 379 IPR013087 -
Tpr5g3076 516 SUPERFAMILY beta-beta-alpha zinc fingers 94 379 IPR036236 -
Tpr5g3076 516 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g3076 Tpr-Chr5 53598398 53601120 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g3076 8 239 C2H2 Transcription Factor Family AT1G26610 39.759 3.59e-37 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr5g3076 zf-C2H2_6 5e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g3076 - - gmx:102666705 548.51