Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g3074 ATGTGCGATTGTTCCAGCTTAATAGGGTGTTTTAGATTCGTTTTTCAAAAGCTTTGCGCGCGTAAATTGATTCTGATTATGGGAATACTATGCGGCTTTGTTTCTAGCAATTGGGCTGAATCAGTCATCCAATTCGATTTCGAAATGGCAACCCAATTTGACATGTTGTGCGATGTTCTTCCTGGGCATAATTCATGGAAGTTCAAAGTTCGTGTCCTCCGTATGTGGGCAATTTCTTCTTTTATGAAGCCTAATGAGTTGAACTCTATGGAAATGGTGCTGATAGATGAGAAGGGAGGTAAGATTCATGCCTTGATAAGGAAAGAATTGGTTTACCTATTCCAGAATAAATTAAAGGAAGGGGAAGTTTATAAGCTATCAAACTTTGATGTTGTTCCAGTCGTTGGATTTTATCGTACAACTCTGCATCCTTACAAATTGATTTTTCGATCGAATACCAAAGTTCAGAATTTTGCGAGTTCTGATATTCCTATTTTGGGATTTTCTTTCACCGATCTTGCTGAAGTGGCTAGCTACTCTGTTAACTATGATTACCTAATAGATGTCATTGGTTTAATCTCTGGTATATCAAATGAGAGGGAGTATATTCGTGCTGGCAAAGTCATCAAGATGGTTGTGCTTGAACTTACAGACAATAGTGGTAAATGTGAATGCGCGTTGTTTGGTGATCATGTTGATGAGTTGCAAAGATTAATTGGTAATTGTCCTTCCGGTCTCCACGTTGTTGCACTACAGTTTGCCAAAGTTAAAATATTTAGAGGGAAAGTTTCCATTCAAGATGTTATGAATACCACAAGGATTTTTCTTGACCCTGAGATTAAAGAGACATCCGAGTTAAGAAAGGGATAA 870 0.3782 MCDCSSLIGCFRFVFQKLCARKLILIMGILCGFVSSNWAESVIQFDFEMATQFDMLCDVLPGHNSWKFKVRVLRMWAISSFMKPNELNSMEMVLIDEKGGKIHALIRKELVYLFQNKLKEGEVYKLSNFDVVPVVGFYRTTLHPYKLIFRSNTKVQNFASSDIPILGFSFTDLAEVASYSVNYDYLIDVIGLISGISNEREYIRAGKVIKMVVLELTDNSGKCECALFGDHVDELQRLIGNCPSGLHVVALQFAKVKIFRGKVSIQDVMNTTRIFLDPEIKETSELRKG* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g3074 289 CDD RPA1_DBD_B_like 188 288 - -
Tpr5g3074 289 CDD RPA1_DBD_A_like 69 155 - -
Tpr5g3074 289 Gene3D - 53 157 IPR012340 -
Tpr5g3074 289 Gene3D - 161 289 IPR012340 -
Tpr5g3074 289 PANTHER REPLICATION FACTOR A 1, RFA1 60 285 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tpr5g3074 289 SUPERFAMILY Nucleic acid-binding proteins 168 287 IPR012340 -
Tpr5g3074 289 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 60 285 - -
Tpr5g3074 289 Pfam Domain of unknown function DUF223 91 184 IPR003871 -
Tpr5g3074 289 SUPERFAMILY Nucleic acid-binding proteins 53 156 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g3074 Tpr-Chr5 53585680 53588978 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g3074 61 287 Core DNA Replication Machinery Family AT4G19130 25.641 6.88e-14 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g3074 - - mtr:MTR_8g062030 262.692