Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g3061 ATGGGTTGTGTGTTTGTGAAGCAAGGGGTGTCTGTGACACCTGCCATTGACCACTCAGTTGACTCAGAGAGGAATAACAGTATAAAGAAGAAGAATAAGAAGAGTAATGAGTCGTTTGGAGTTAGTTGGAGTGAGGTAGGTGAGTCAGGGAGAACCAGTTTGAATGGTGAAACTGGGTCTTTGAGTTTCAGGTTAGGGAATCTCAGTAAGTATGTTGAAGGAGAACAAGCTGCCGCCGGTTGGCCGGCTTGGATCACCTCCGTTGCCGCCGAAGCTATTCATGGTTGGGTTCCTCTCCGTTCTGATGCATTTGAAAAACTTGACAAGATTGGGCAGGGAACATATAGCAGTGTTTTCCGAGCGAAGGAGATTGAGACGGGGAAGATAGTGGCTTTAAAGAAGGTGAGATTTGACAATTTTGAGCCAGAAAGTGTGAGGTTTATGGCACGAGAAATATTGATTCTTAGAAGGCTTGATCATCCCAATATCATTAAACTGGAAGGCTTGATTACTTCAAGATTGTCTTGTAGCATCTACCTTGTATTTGAGTACATGGAGCATGATGTTACAGGGCTCTTGTCAAAACCAGAAATCAACTTTACTGAAGCACAGATCAAATGCTACATGAAACAGTTGTTATCTGGTCTTGAGCACTGTCACTCAAGGGGTGTAATGCACCGGGACATTAAAGGGTCAAATCTTTTGGTGAATAATGAAGGGATATTAAAGGTAGCAGATTTTGGATTGGCGAATTTCTGTAGTTACGGGAACAAGCAGCCACTAACTAGTCGCGTTGTCACATTATGGTACCGTCCTCCAGAACTTTTGCTTGGTTCAACAGATTATGGTCCATCTGTGGATATTTGGAGTGTTGGTTGTGTCTTTGCAGAGTTACTAGTTGGGAAGCCTATACTTAAGGGAAGAACAGAGGTTGAACAATTGCACAAAATTTTCAAGCTTTGTGGCTCTCCGCCAGACGAATACTGGAAAAAGACCAGACTTCCTCATGCAACTTTGTTCAAGCCACAACAACCATATGATAGTTGCCTAAGAGAAACATTTAAAGATTTTCCTGCAACCAGTGTAAATTTGTTACAAACACTTCTTTCTGTTGAACCAAACAAACGCGGAACTGCTTCATCTGCTCTCTCGTCGGAGTATTTCAAAACAAAACCTTATGCATGTGACCCATCAAGCTTACCAGTATACCCACCTAGCAAAGAGATCGATGCAAAACACGAGGAGGAGACAAAAAGGAAAAAGATTGCTGGGAGAGTTGGTGGACCTGAATCAAGAAGAACATCAAGAAAGCCAGCAAGACCGAATAAATTACCCCTTGCACCGGATTTGAAAAGTCAAATTCAAACTACACAAAAAATAGATGTTAAAGAAGAGAACACTAACATATGTGATGAGGCATCAAAGCCATCCAATGGTAAAGCAGAAGATGATTCTCATATGAAGAATGCATCTCAAGCAGATGTTCCCTTTCATGGACCATTACAAGTTTCAAAATCAAGTGGATTTGCATGGGCAAAAAGGCGTAAAGATGACACTACTTCAATTAGATCCCACACTCGATCTATTTCTAAAGGACATATATTTAATTCATTAGAAACTTCTACAATAAATTCAAGGGAAGTTTCTGATGATAATAGAAACAATGAAAATAAGGAAGTTTTTGGGGAACGCACCAGCTCAAGAGGCCGTGATCTATTTGAAATTTCTAAGCTAGTAATGCAAAATCAATGGAGTAAGTTTGACCGCCCGGATTCCTTTGATACTTCTGAAGAGTACCACTCACAAGAACTGTCTATGATGGTTTATCATAGAGAAGATTCACTGTCCAGGAGAAGTAACAGGAGTTATCAGGATCAAGGAGAGAAAGTTGAATTTTCAGGGCCTCTAATATCTCAAATGCATACAGTTGATGAGCTCTTAGAAAGACATGAGCGCCACATTCGGCATACAGTCCGAAGATCATGGTTTCAGAGAGGTAAAAAGCGTGGGAATTAA 2016 0.4092 MGCVFVKQGVSVTPAIDHSVDSERNNSIKKKNKKSNESFGVSWSEVGESGRTSLNGETGSLSFRLGNLSKYVEGEQAAAGWPAWITSVAAEAIHGWVPLRSDAFEKLDKIGQGTYSSVFRAKEIETGKIVALKKVRFDNFEPESVRFMAREILILRRLDHPNIIKLEGLITSRLSCSIYLVFEYMEHDVTGLLSKPEINFTEAQIKCYMKQLLSGLEHCHSRGVMHRDIKGSNLLVNNEGILKVADFGLANFCSYGNKQPLTSRVVTLWYRPPELLLGSTDYGPSVDIWSVGCVFAELLVGKPILKGRTEVEQLHKIFKLCGSPPDEYWKKTRLPHATLFKPQQPYDSCLRETFKDFPATSVNLLQTLLSVEPNKRGTASSALSSEYFKTKPYACDPSSLPVYPPSKEIDAKHEEETKRKKIAGRVGGPESRRTSRKPARPNKLPLAPDLKSQIQTTQKIDVKEENTNICDEASKPSNGKAEDDSHMKNASQADVPFHGPLQVSKSSGFAWAKRRKDDTTSIRSHTRSISKGHIFNSLETSTINSREVSDDNRNNENKEVFGERTSSRGRDLFEISKLVMQNQWSKFDRPDSFDTSEEYHSQELSMMVYHREDSLSRRSNRSYQDQGEKVEFSGPLISQMHTVDELLERHERHIRHTVRRSWFQRGKKRGN* 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g3061 671 PANTHER CELL DIVISION PROTEIN KINASE 35 664 - -
Tpr5g3061 671 CDD STKc_CDK9_like 104 388 - -
Tpr5g3061 671 MobiDBLite consensus disorder prediction 545 566 - -
Tpr5g3061 671 MobiDBLite consensus disorder prediction 464 488 - -
Tpr5g3061 671 ProSitePatterns Serine/Threonine protein kinases active-site signature. 224 236 IPR008271 GO:0004672|GO:0006468
Tpr5g3061 671 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 35 664 - -
Tpr5g3061 671 SMART serkin_6 104 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr5g3061 671 Pfam Protein kinase domain 104 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr5g3061 671 MobiDBLite consensus disorder prediction 449 463 - -
Tpr5g3061 671 ProSiteProfiles Protein kinase domain profile. 104 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr5g3061 671 MobiDBLite consensus disorder prediction 549 566 - -
Tpr5g3061 671 Gene3D Phosphorylase Kinase; domain 1 91 186 - -
Tpr5g3061 671 MobiDBLite consensus disorder prediction 408 437 - -
Tpr5g3061 671 ProSitePatterns Protein kinases ATP-binding region signature. 110 133 IPR017441 GO:0005524
Tpr5g3061 671 SUPERFAMILY Protein kinase-like (PK-like) 98 395 IPR011009 -
Tpr5g3061 671 Gene3D Transferase(Phosphotransferase) domain 1 187 427 - -
Tpr5g3061 671 MobiDBLite consensus disorder prediction 408 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g3061 Tpr-Chr5 53505372 53510029 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g3061 96 422 Core Cell Cycle Gene Families AT5G10270 51.282 1.74e-114 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Tpr5g3061 Pkinase 2.2e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g3061 - - gmx:100816047 1093.95