Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g3053 ATGGAGATTGAGGAACTTATTGATTTGAATAGCAAAGAGAGTAATTGTGGTGGAAATAATAGCAAGAATGGTGATGGATTCATTGATAGGAGTAAAGTTAGGATTTTGCTTTGTGATAATGATTCCAAGAGTTCAGAAGAGGTTTTTACTCTTCTTTTGAATTGCTCTTATCAGGTTACGTCTGTAAGATCAGCAAGGCAAGTTATTGATGCATTGAATGCGGAAGGGCAATATATAGATATCATACTAGCTGAAGTTGACCTTCCAACCAAAAAGGGCATGAAGATGTTGAAATACATAGCACGGGATAAAGAATTGCGCCGAATCCCTATTATAATGATGTCTGCACAAGACGAGGTATCAATTGTTGTTAAGTGCTTAAGACTCGGAGCAGCAGATTATCTAGTAAAGCCTTTACGCACTAATGAACTATTGAATTTGTGGACACACATGTGGAGACGGAGACGGATGCTTGGACTTACAGAGAACAACATCTGTAGTTATGATTTTGATATGGTAGCATCAGACCCAAGTGATGCCAATACAAACAGTACCACCTTGTTATCTGATGACACAGATGACCGGTCCAAAAGAAGCACTAATCCAGAGCCTGTAATTCCAATCCAACAAGAACAAGAGGCCAGTAGTGCCACTGCTGCTGCTTCTGCTGCTGCTGCTGCTTCTGTTATTGAGGAGCTTCCATATGCTCGTGCATCAGAATATCAGCCTGATGTACCCGGAATTAGTGATCGGAGAACAGGTTCTTTAGGACAACATCCACCATGCAACAGAGTTACAGATGGTAGCTTTGATGGACATTTTTCATCAGGTCCAAAGAAGAGTGAACTAAGAATTGGAGAGTCATCAGCCTTTCTTACTTATGTCAAAACAACAACCAAGAAGAGCAACTTTGAAGAGACTGCTCATGTCGATAATAATGGTACTTCACAAGCAAGGGTGGAAGATATGATGAATCAAGCATGTTCTCAACAAGGGGGTAATGACCTTATAAGACATGAAAATGGAGAAATGTTTGAAAGCCATTCACAAGATGACTTACCTAGAAGCAATAGTATCCCCGATTCTTTCTCTGTTGACAGATCATGTACCCCACCTGCATCAATGGAGGTTTCACAGCAAAATAATTACAATGAAGAACATCCACATGGGGTGGTTCATCCAAGAAACGGAAGTTATGGTTCTCAGCTCGACCAATCAGGCATGCATGCCCAACATGCTTATCCATATTATACACCAGGAGGTTTTAATCATGTTATGATGTCATCAGCACAAATGTATCAAAAGAATATTCAGGACCTTCAGAGTCATGTTAGTTCATCTATGATTGCCCAGTACAATAACGTTCCCCAATGTCCACCTCATGCAACTGGGATGACACCGTTCCCGTATTTTCCAATGAGTATTTGTTTACAAACTGGTCAGGTTTCTACAGGCCATTCATGGCCATCATTAGGAAGTTCAACTTCGTGTGAAGCAAACTTAAGAAAAGTTGATAGGAGAGAAGCAGCATTAATGAAGTTTAGACAGAAAAGAAAAGAGCGATGCTTTGATAAGAAAATTAGGTATGTCAATCGGAAACAACTTGCAGAAAGGCGACCTCGTGTTAGGGGACAGTTTGTGAGAAAGTTGAATGGTATTAACGTGGATCTAAATGGACAACCTGCTTCCACCGACTATGATAATGATGAGGAGGAGGAGGATGAAAGCAATGATGTGAGAGATTCCTCTCCTAAGGATGCTTGA 1764 0.4059 MEIEELIDLNSKESNCGGNNSKNGDGFIDRSKVRILLCDNDSKSSEEVFTLLLNCSYQVTSVRSARQVIDALNAEGQYIDIILAEVDLPTKKGMKMLKYIARDKELRRIPIIMMSAQDEVSIVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLTENNICSYDFDMVASDPSDANTNSTTLLSDDTDDRSKRSTNPEPVIPIQQEQEASSATAAASAAAAASVIEELPYARASEYQPDVPGISDRRTGSLGQHPPCNRVTDGSFDGHFSSGPKKSELRIGESSAFLTYVKTTTKKSNFEETAHVDNNGTSQARVEDMMNQACSQQGGNDLIRHENGEMFESHSQDDLPRSNSIPDSFSVDRSCTPPASMEVSQQNNYNEEHPHGVVHPRNGSYGSQLDQSGMHAQHAYPYYTPGGFNHVMMSSAQMYQKNIQDLQSHVSSSMIAQYNNVPQCPPHATGMTPFPYFPMSICLQTGQVSTGHSWPSLGSSTSCEANLRKVDRREAALMKFRQKRKERCFDKKIRYVNRKQLAERRPRVRGQFVRKLNGINVDLNGQPASTDYDNDEEEEDESNDVRDSSPKDA* 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g3053 587 MobiDBLite consensus disorder prediction 179 219 - -
Tpr5g3053 587 SMART REC_2 33 148 IPR001789 GO:0000160
Tpr5g3053 587 Gene3D - 33 242 - -
Tpr5g3053 587 PANTHER TWO-COMPONENT RESPONSE REGULATOR 2 572 IPR045279 GO:0009736
Tpr5g3053 587 PANTHER RESPONSE REGULATOR AND TRANSCRIPTION FACTOR RR-A-TYPE FAMILY-RELATED 2 572 - -
Tpr5g3053 587 Pfam CCT motif 507 549 IPR010402 GO:0005515
Tpr5g3053 587 Pfam Response regulator receiver domain 35 146 IPR001789 GO:0000160
Tpr5g3053 587 ProSiteProfiles CCT domain profile. 507 549 IPR010402 GO:0005515
Tpr5g3053 587 MobiDBLite consensus disorder prediction 557 587 - -
Tpr5g3053 587 SUPERFAMILY CheY-like 29 158 IPR011006 -
Tpr5g3053 587 MobiDBLite consensus disorder prediction 202 219 - -
Tpr5g3053 587 ProSiteProfiles Response regulatory domain profile. 34 152 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g3053 Tpr-Chr5 53434310 53439491 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g3053 22 586 Response Regulator Gene Family AT5G61380 51.017 2.03e-180 521
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Tpr5g3053 Response_reg 1.9e-17 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g3053 K12127 - gmx:100786522 870.537