Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g3048 ATGGATACTGGACTAAACGAAAGACCCTTTTTGGGTTTTCGTTTTGTCTCCAAATTTTTATTTTGCGCCATTTCTGGAACTCTCACTGCATGTTTTGCCCTTGCTGGGGCCCTCACAGGAGCTATAGCTGGTGCTTTAGCAGCTAAGGCTACAAAGAGTGGTTTTCTCCGGGGAGTTTCATTGGGTGCCATTGCCGGGGCTATACTCTCTGTGGAGGTCTTGGAAGCTTCTCGTGCGTATTGGTGTATGGAGCAAACCGGTGCACGTGGTGCATCATCTATGTTTGAACAGGTTGGAATTGCTAATAACGCAGGCTATGATGAGTTTCATGATGTTCATAGCTTAGCAGCATCCAGAGGATTGTCAGGTGATTCGTTGGATAAGCTACCGCACCATATGATTTTGAAGGACATGAAGGCAGAGGATACTTTCTGCGCAATATGTTTGCAGGATATTGAAGTAGGTGAAATCGCAAGAAGCTTACCTCGTTGTGATCATACATTTCACTTGATATGCGTGGACAAGTGGCTTGTCAAGAACGATTCGTGTCCTATTTGCAGACAGAATGTATAG 573 0.4503 MDTGLNERPFLGFRFVSKFLFCAISGTLTACFALAGALTGAIAGALAAKATKSGFLRGVSLGAIAGAILSVEVLEASRAYWCMEQTGARGASSMFEQVGIANNAGYDEFHDVHSLAASRGLSGDSLDKLPHHMILKDMKAEDTFCAICLQDIEVGEIARSLPRCDHTFHLICVDKWLVKNDSCPICRQNV* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g3048 190 ProSiteProfiles Zinc finger RING-type profile. 145 187 IPR001841 -
Tpr5g3048 190 SUPERFAMILY RING/U-box 126 190 - -
Tpr5g3048 190 Pfam Ring finger domain 145 187 IPR001841 -
Tpr5g3048 190 SMART ring_2 145 186 IPR001841 -
Tpr5g3048 190 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 97 189 IPR044523 -
Tpr5g3048 190 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 12 95 IPR044523 -
Tpr5g3048 190 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 190 IPR013083 -
Tpr5g3048 190 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 12 95 - -
Tpr5g3048 190 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 97 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g3048 Tpr-Chr5 53398584 53401656 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g3048 16 190 C3H Transcription Factor Family AT1G74410 51.244 2.38e-58 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g3048 - - mtr:MTR_4g108830 338.961
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g3048 5 53398584 53401656 Tpr5g3048 5 53398584 53401656 ECH