Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g3046 ATGGAAAACGTTCTGTTATCATGTAACAAAGAAGATGAGAAGATGGATTTGCCTCCTGGTTTTCGATTTCATCCTAATGATGAAGAGCTTATAAGTCATTATCTTTACAAAAAAGTTCTTGATTCAAATTTCTCTGCAAGAGCTATTGGTGATGTAGACCTCAACAAATCTGAACCTTGGGATTTACCATGGAAAGCTAAAATGGGAGAAAAAGAATGGTACTTTTTCTGTGTGAGAGACAGAAAATACCCAACTGGTTTAAGAACAAACAGAGCAACAGAACAAGGTTATTGGAAAGCTACTGGGAAAGATAAAGAGATTTTCAAAGGAAAATCTTTGGTTGGAATGAAGAAAACTCTTGTTTTCTACAAAGGAAGAGCACCTAAAGGAGAAAAAAGTAATTGGGTCATGCATGAATATCGACTTGAGGGTAAATTCTCTGTTCATAATCTTCCCAAATCTGCAAAGAACGAGTGGGTTATATGTAGGGTTTTTCAGAAGAGTTCAGCTGGTAAAAAAACACATATTTCTGGGATAATGAGGTTGGATTCACTCGGTAACGAATTGGGTTGTTCTGTTTTGCCACCCCTTACTGATACGTCACGATCTATAGGAAAACTCAAACAATCGAATGATTCGGCTTACGTGCCCTGCTTCTCCAATTCAATTGATGTTCAAAGAAACCAAGGAGGGATCTTTGATTCATTCAACAACTCAATCTACGGTGTTTCATCGAATAATCAACTCGATAATTTTTCAAGAATTTTAGCTTCTAATGCTGGTTCATTATACTCTAATAATAATAATAATCAATCTGCGGTTAATTTGCAATTTCCTGGTTCTGTTTGTGGTATGCAAGATCAAGCAATTTTAAGAGCTTTGTATGAAAACAATGGTTTTAAGACTGAGAGACAAGTTTCACATGAAACTGATCTAACTACTGATATGAATGGTGAAAGATGTTCTTTTGATATTGGTAGAAGAGCTTATGAAAATAATCAGAATCGTCCACCACCTGCTTCTGTTGCAGCTGTTGATTTTGATGGTACTTTGTGGAATTACTAA 1065 0.3568 MENVLLSCNKEDEKMDLPPGFRFHPNDEELISHYLYKKVLDSNFSARAIGDVDLNKSEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEQGYWKATGKDKEIFKGKSLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLEGKFSVHNLPKSAKNEWVICRVFQKSSAGKKTHISGIMRLDSLGNELGCSVLPPLTDTSRSIGKLKQSNDSAYVPCFSNSIDVQRNQGGIFDSFNNSIYGVSSNNQLDNFSRILASNAGSLYSNNNNNQSAVNLQFPGSVCGMQDQAILRALYENNGFKTERQVSHETDLTTDMNGERCSFDIGRRAYENNQNRPPPASVAAVDFDGTLWNY* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g3046 354 SUPERFAMILY NAC domain 13 167 IPR036093 GO:0003677|GO:0006355
Tpr5g3046 354 PANTHER NAC DOMAIN-CONTAINING PROTEIN 100 8 350 - -
Tpr5g3046 354 Pfam No apical meristem (NAM) protein 18 142 IPR003441 GO:0003677|GO:0006355
Tpr5g3046 354 Gene3D NAC domain 26 171 IPR036093 GO:0003677|GO:0006355
Tpr5g3046 354 ProSiteProfiles NAC domain profile. 17 167 IPR003441 GO:0003677|GO:0006355
Tpr5g3046 354 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g3046 Tpr-Chr5 53378722 53380736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g3046 15 354 NAC Transcription Factor Family AT5G07680 56.268 1.98e-124 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tpr5g3046 NAM 6.2e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g3046 - - cam:101502392 594.349