Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g3044 ATGGGGAGAGTTAAACTGAAGATAAAGAAATTGGAAAGCACAAGCAACCGACATGTGACTTATTCAAAGCGGAAAAGTGGAATTTTAAAGAAAGCAAAGGAATTATCAATTCTATGTGATATTGATATTCTACTTCTCATGTTTTCTCCCACAGAAAAACCTACCTTATTACAGGGAGAGCGCAGTAATATGGAGGAGATCATTTCAAAGTTTGCTCAACTTAGCCCACAAGAAAGGGCCAAAAGGAAAATGGAAAGTCTTGAAGCACTGAAAAAGACCTTCAAGAAATTGGATCATGATGTAAAAATACAAGATTTCTTGGGTTCAAGCAGTCAAACAATGGAGGAATTAAGTCATCAAGTGAGAGTTTTACAAGCTCAACTCGCAGAAACACAACAGAGACTGAGCTATTGGAGTAATCTGGAGAAGATCAATAACTTGGAACATCTTAGACAAATGGAAGACTCACTACGGGAATCAGTCAATCGACTATGTATACAAAAGGAAAATTTAAGAAAGCGTCAACTAATGTCACTTGATTGTGCTAACCAGTTACCCGAAGGGATGACTTTACCTTTGATGATGGCTGGTCTACAAGAATCTCAACCCTTGTCTTGGCTTCTAAGTGGCGATAATCACCAGTTGATGTTACCTAATGAACCAAAATTTATGCCATTTAGTGATAATGGCAATAGAGATGTTGAGTGCTCCACCGACATTTCACTCCCGGGCTATTCTGGTTATATTGGGAATGGCAAACTTGAGGTTGGAAGCTCTCCCCATGTCAATACTTTGGGTCAGGGAGGTAGTTCTTTGAACGAGTTAAACGGAAATCCAAATCCTTACTTAAATGTTCAACAGTGTGATCAATTTGCATACCCTCCTCCACAAGATCTCGAGGAAGTGAAACATCACCAAACAATGAATAGTAAATCAAATACTATGGATTACCAAGTTAATAACAACTATGAACTTCCAAGATCATTATTTGAAAATGAACATCAGCAGTTCTGGAATTCTACTAATGGCTCTTGTGGGATTGCTATGTATAATGAGAATGGTTACCATAGGTAA 1074 0.3799 MGRVKLKIKKLESTSNRHVTYSKRKSGILKKAKELSILCDIDILLLMFSPTEKPTLLQGERSNMEEIISKFAQLSPQERAKRKMESLEALKKTFKKLDHDVKIQDFLGSSSQTMEELSHQVRVLQAQLAETQQRLSYWSNLEKINNLEHLRQMEDSLRESVNRLCIQKENLRKRQLMSLDCANQLPEGMTLPLMMAGLQESQPLSWLLSGDNHQLMLPNEPKFMPFSDNGNRDVECSTDISLPGYSGYIGNGKLEVGSSPHVNTLGQGGSSLNELNGNPNPYLNVQQCDQFAYPPPQDLEEVKHHQTMNSKSNTMDYQVNNNYELPRSLFENEHQQFWNSTNGSCGIAMYNENGYHR* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g3044 357 Coils Coil 77 97 - -
Tpr5g3044 357 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 1 356 - -
Tpr5g3044 357 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tpr5g3044 357 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tpr5g3044 357 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Tpr5g3044 357 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tpr5g3044 357 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 54 IPR002100 GO:0003677|GO:0046983
Tpr5g3044 357 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Tpr5g3044 357 Coils Coil 114 134 - -
Tpr5g3044 357 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Tpr5g3044 357 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Tpr5g3044 357 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 356 - -
Tpr5g3044 357 CDD MADS_SRF_like 2 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g3044 Tpr-Chr5 53351425 53355730 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g3044 1 276 Type I MADS-box Gene Family AT2G03060 50.526 1.36e-85 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tpr5g3044 SRF-TF 4.8e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g3044 - - pvu:PHAVU_003G189100g 588.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g3044 5 53351425 53355730 Tpr5g3044 5 53351425 53355730 ECH