Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g3036 ATGGTGAGGCCACCATGTTGTGAGAAATTAGGTATTAAGAAAGGACCTTGGACTCCTGAGGAAGATATCATCTTAGTTTCTTACATTCAACAACATGGACCTGGAAATTGGAGATCAGTTCCGACGAATACCGGTTTGATGAGATGTAGTAAGAGTTGTAGACTTAGATGGACAAACTATCTTCGACCCGGCATCAAACGAGGTAACTTCACAGATCATGAAGAGAAAATGATTGTTCATCTCCAAGCTCTTTTGGGCAACAGATGGGCTGCTATAGCTTCATATCTTCCTCAAAGGACGGACAACGATATAAAAAATTATTGGAATACTCATTTAAAGAGGAAGCTGAACAAAGATCAAAGTTCTGATGAAACCGGTGTTGATCAAGAAGCTCGTTCGCAGCTGCCAAATAAAGGACAATGGGAGAGAAGGCTGCAAACAGATATTCATATGGCCAAACAAGCCTTATCCGAGGCTTTATCGCTTCAACAAAGCCCAACTAAACCTGAGATGAAGCCCTCATCAAGTTCCTCTCATTCTCATGAACATCTACCAAATCTTCATATTCCATCTCCATATGCATCAAGCTATGAAAACATTGCTAGATTGATGGAAAATTGGATGAAATCACCTAACTCAGCTGAAACAAATTCCTCATCAATATTCAGCAACTTGGTAACCACAGCAGGATCAAGTTGTAGTGAAGGAGCACAAAGCACAACACAAGATCATCATGTTTTTGACTCTAAGATTTTCAACTCCAAATCTGAATATTATGCCTCTAGATTTAGGGCAACTCATGAAGGGAATAATAACTTGATGAATACGAAAGAGAGTCTCTTTCAAGATGAAATGATTAATATTAAAGGAAAAATGGAAACAAATGTCCCATTAACTTTGTTGGAAAAATGGCTTTTTGAAGATGGAGGGGCAAGTCATGAATGCCATGAAGATCTTATAAACATGTCATTGGGAGATCAAAGTACTTCAGATTTGTTTTAG 1002 0.3842 MVRPPCCEKLGIKKGPWTPEEDIILVSYIQQHGPGNWRSVPTNTGLMRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIVHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKRKLNKDQSSDETGVDQEARSQLPNKGQWERRLQTDIHMAKQALSEALSLQQSPTKPEMKPSSSSSHSHEHLPNLHIPSPYASSYENIARLMENWMKSPNSAETNSSSIFSNLVTTAGSSCSEGAQSTTQDHHVFDSKIFNSKSEYYASRFRATHEGNNNLMNTKESLFQDEMINIKGKMETNVPLTLLEKWLFEDGGASHECHEDLINMSLGDQSTSDLF* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g3036 333 CDD SANT 69 112 IPR001005 -
Tpr5g3036 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Tpr5g3036 333 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Tpr5g3036 333 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tpr5g3036 333 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tpr5g3036 333 MobiDBLite consensus disorder prediction 117 141 - -
Tpr5g3036 333 CDD SANT 16 61 IPR001005 -
Tpr5g3036 333 Gene3D - 68 142 - -
Tpr5g3036 333 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 320 - -
Tpr5g3036 333 MobiDBLite consensus disorder prediction 160 184 - -
Tpr5g3036 333 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Tpr5g3036 333 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 320 - -
Tpr5g3036 333 MobiDBLite consensus disorder prediction 127 141 - -
Tpr5g3036 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Tpr5g3036 333 SMART sant 66 114 IPR001005 -
Tpr5g3036 333 SMART sant 13 63 IPR001005 -
Tpr5g3036 333 MobiDBLite consensus disorder prediction 160 190 - -
Tpr5g3036 333 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tpr5g3036 333 Gene3D - 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g3036 Tpr-Chr5 53278911 53280727 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g3036 1 327 MYB Transcription Factor Family AT5G62470 49.462 3.42e-105 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr5g3036 Myb_DNA-binding 1.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g3036 K09422 - pvy:116114586 391.734