Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g3028 ATGGGGTCAGAGAGTATTGCTCCAATGGTTGAGACATCAAAAAACAGGTCTTCTCCTGGTACAGTAAACCAAGGGAAAGTCCCTAAGAGAATTCACAAGGCTGAAAGGGAGAAAATGAAGCGTGAACACTTAAACGAACTCTTTCTTGATCTTGCCAATGTTCTTGATCTCAATGAGCCGAACAATGGAAAGGCTTCTATATTGTGTGAAGCTTCTAGGCTGCTAAAGGACTTGCTCTGTCAGATTCAGTCCCTCAAGAAGGAGAACGTCTCTTTGTTGTCTGAATCTCATTATGTAACCATGGAGAAAAATGAACTGAAGGAGGAAAATGGTAGTTTAGAAACTCAAATTGAGAAGCTTCAAGGAGAGATACAGGCAAAAATGGCTCAATCCAAACCTGACCTGAATGTACCTCCTCATTTGGAGCTTGAGCTGCCAGAACTGACAAAATTTCCAGGACATGCTTTCCAAATGCCTACCATAGAACCTACATTGCAGCAAGGACCTGCTGTTTTGGTTGTCCCTTTTCGTCCTGATCTTCAAGCTGCTTTTCCAGCTCCTAATGTTACTGAGCTCACGCCAAAACCTGCACCTGGTATCAGTAAACCACATGCCAGGTATCCCACGCCAGCTGATTCGTGGCCATCTCAACTGCTTGGAGAGCAACCAACTTCTAATCTGTAG 684 0.4401 MGSESIAPMVETSKNRSSPGTVNQGKVPKRIHKAEREKMKREHLNELFLDLANVLDLNEPNNGKASILCEASRLLKDLLCQIQSLKKENVSLLSESHYVTMEKNELKEENGSLETQIEKLQGEIQAKMAQSKPDLNVPPHLELELPELTKFPGHAFQMPTIEPTLQQGPAVLVVPFRPDLQAAFPAPNVTELTPKPAPGISKPHARYPTPADSWPSQLLGEQPTSNL* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g3028 227 MobiDBLite consensus disorder prediction 1 24 - -
Tpr5g3028 227 MobiDBLite consensus disorder prediction 188 227 - -
Tpr5g3028 227 PANTHER TRANSCRIPTION FACTOR BHLH47 6 225 - -
Tpr5g3028 227 Coils Coil 75 95 - -
Tpr5g3028 227 MobiDBLite consensus disorder prediction 1 30 - -
Tpr5g3028 227 PANTHER TRANSCRIPTION FACTOR BHLH47 6 225 - -
Tpr5g3028 227 Coils Coil 103 130 - -
Tpr5g3028 227 CDD bHLH_AtILR3_like 33 107 - -
Tpr5g3028 227 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 28 78 IPR011598 GO:0046983
Tpr5g3028 227 Gene3D - 26 104 IPR036638 GO:0046983
Tpr5g3028 227 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 26 93 IPR036638 GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g3028 15 222 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47640 51.327 1.23e-64 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g3028 - - mtr:MTR_4g108360 378.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g3028 5 53200263 53202532 Tpr5g3028 5 53200263 53202532 ECH