Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g3020 ATGGTACTAAATCAGTCCAGCTTCTGGACTCAAGCAAACGCGCTTTTCAGAAAGAGCTTAACCTTCCAGAAACGGAACGTGAAGACCAACGTTAGACTCATTCTACTCCCATTGATTCTTTGCGTTTTATTGGTTCTTCTTCAAAATTTGATCGATTATCTAAATGATAAAACTACTGTCTTCAAATGCGGTTGCGTATGTCCCAATCAGAGAGAAACCTGTGATGATTCAGAGAAGCTTTGTGGTGTTCAATATTCAGATCAAACTCAAGCTATTTTCTGTAAAATCCCTAATCCACCTGAATGGCCTCCTCTCTTGCAACTCCCTGCCGTGTACTGCAAGAAAAACCAGTCTTGTCCTTTTAGCATGCTTTTTACAGCGGAAAATCAGTCCTTTGCACAAATTGTGTCTGACAATATGTTCCCAAGTGCACCCACTGTGGATTTTTCTGATATCATGGCTAGTTTTTACACAAATGTGCTGGGGTCTGCATCACTGCCTGGGACCACCAATTTTCTTGAATCTGGTTTCACTCCGGATGTTCCAGTTTATTATCTACAAACTCAGTGTCCTCAGAACAACTCTGGAATCTCATTTCCCTACAAGATAAAAGGCAAAACTATCCAGCTAGACATCAGATGTGGTCAGGGTATAAACTTTTGGCGTAACAGTTCTGATGATATCAACAATGAGATATATCAAAGTTATAAAAGAAAGAAATCCGAAGGAAGGATCAATGCGATAATTACAGCTTTTGATTTTCTAAATTCAAATGACGATGCATTCGATGTCACTGTATGGTACAATGGAACCAAAAAAAAGGGTGACGTATTGTCGCGAGTTCCTCGTTCTATAAATCTGATATCAAATGCGTACCTGCAGTTTCTGTGTGGACCTGGTACCAAAATGTTATTTGAGTTTGTAAAGGAAATGCCAAAATCTGAGACTTCATATAGGATCAATATAGCTGCTCTCCTGGGTGGTCTGTTCTTTACATGGGTCATCCTTCAACTTTTTCCGGTTGTTCTGACATCACTGGTTTATGAGAAGGAACACAAATTAAGAATCATGATGAAAATGCATGGTCTTGGTGATGGGCCATATTGGATGATTACATATGGTTATTTTCTTGTATTATCAATGATCTACATGTTGTGCTTTGTGATATTCGGCTCAGTCTTAGGATTAAAATTCTTTACCTTGAATGACTACAGCATCCAGTTCGTGTTCTATTTCATCTATATAAACTTACAAATTTCACTGGCATTTCTGTTGTCTTCTGTTTTTTCAAATGTTATGACTGCTACAGTAACCGCATACATGGGTGTCTTTGGCACCGGGATATTATCCGGGGTTCTTTTCCAATCTTTTATTGAAGATTCTTCATTTCCAAGAAAATGGCTCATTTGTATGGAGTTGTATCCCGGGTTTGCTTTATATCGTGGATTATGGGAGTTTTCACAGTCTGCCTCCATGGGGACTGATGGTATGCGGTGGCGGGATCTGAGTAATAGTACAAATGGAATGAAAGAGGTCTTAATTATCATGTTTGTTGAGTGGACAGTATTTCTTTTTGTTGCTTATTACATCGACCAAGTATTATCGACAGGAAGTAGAAAAAGTCCTCTTTTCTTCTTAAAAGGATTTCAGAAAAAACATCTTTCATCATTCAAGACGAAGCTAAGTATTCAAAGGCAGGGGTCAAACGTTTTGGCGCACACATGGAAACCTGATGTCATCCAAGAGAGGGAGAAGGTGGAGCAGCTTCTACTTCAGCCAACCATTAACCATGCAATTGTTTGTGATGACCTAAAAAAATTCTATCCAGGAAGAGATGGTAATCCAGGGAAATTTGCAGTAAAGGAATTGTTTCTTGCTGTGCCTCGAGGGGTATGCTTCGGTATGCTTGGTCCTAATGGGGCTGGGAAGACTTCTTTTATCAGTATGATGATTGGTCTCACAAAGCCATCATCGGGTGTGGCATATGTTGAGGGCCTTGACATAAGAACTCATATGGATGCAATATATACTAGCATGGGTGTATGCCCACAGCATGACTTGCTGTGGGAAAGCTTGACAGGTAGAGAGCACCTACTTTTTTATGGCAGACTAAAAAATCTTAAAGGTTCAGCCTTGACTCAAGCAGTAGAAGAATCTTTGAAGAGTTTAAACCTTTTCCATGGAGGGGTTGCTGATAAAAAAGCTGGAAAATACAGTGGAGGGATGAAGAGGAGGCTTAGTGTTGCAATTTCATTGATTGGAGACCCCAAAGTTGTTTATATGGATGAGCCAAGTTCTGGATTAGACCCTGCTTCAAGGAAATGCCTATGGAATGCTATCAGGCTTGCAAAACGGGATCGTGCAATCATTCTTACCACACATTCTATGGAAGAGGCAGAGGCGCTATGTGATCGATTAGGAATTTTTGTAGATGGTAGTTTGCAATGCATAGGAAATCCAAAGGAGCTGAAAGGCAGATATGGAGGAACTTATGTGTTCACAATGACAACATCTTTGGATCACGAGAAGGATGTGGAGGAAATGGTAGAACAGCTCACTCCAAATGCCAACAAGATATACCAACTCTCTGGCACCCAAAAATTTGAGTTGCCAAAAGAGGAAGTTAAAATAGCGAATGTATTCCAAGCTGTTGAAGTTGCAAAAAGAAACTTCACTGTTTTTGCATGGGGTTTAGCCGACACCAGATTAGAAGATGTCTTCATTAAGGTGGCACGTGAGGCTCAAGCATTTGATACGTTGTCATAA 2766 0.4009 MVLNQSSFWTQANALFRKSLTFQKRNVKTNVRLILLPLILCVLLVLLQNLIDYLNDKTTVFKCGCVCPNQRETCDDSEKLCGVQYSDQTQAIFCKIPNPPEWPPLLQLPAVYCKKNQSCPFSMLFTAENQSFAQIVSDNMFPSAPTVDFSDIMASFYTNVLGSASLPGTTNFLESGFTPDVPVYYLQTQCPQNNSGISFPYKIKGKTIQLDIRCGQGINFWRNSSDDINNEIYQSYKRKKSEGRINAIITAFDFLNSNDDAFDVTVWYNGTKKKGDVLSRVPRSINLISNAYLQFLCGPGTKMLFEFVKEMPKSETSYRINIAALLGGLFFTWVILQLFPVVLTSLVYEKEHKLRIMMKMHGLGDGPYWMITYGYFLVLSMIYMLCFVIFGSVLGLKFFTLNDYSIQFVFYFIYINLQISLAFLLSSVFSNVMTATVTAYMGVFGTGILSGVLFQSFIEDSSFPRKWLICMELYPGFALYRGLWEFSQSASMGTDGMRWRDLSNSTNGMKEVLIIMFVEWTVFLFVAYYIDQVLSTGSRKSPLFFLKGFQKKHLSSFKTKLSIQRQGSNVLAHTWKPDVIQEREKVEQLLLQPTINHAIVCDDLKKFYPGRDGNPGKFAVKELFLAVPRGVCFGMLGPNGAGKTSFISMMIGLTKPSSGVAYVEGLDIRTHMDAIYTSMGVCPQHDLLWESLTGREHLLFYGRLKNLKGSALTQAVEESLKSLNLFHGGVADKKAGKYSGGMKRRLSVAISLIGDPKVVYMDEPSSGLDPASRKCLWNAIRLAKRDRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKGRYGGTYVFTMTTSLDHEKDVEEMVEQLTPNANKIYQLSGTQKFELPKEEVKIANVFQAVEVAKRNFTVFAWGLADTRLEDVFIKVAREAQAFDTLS* 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g3020 921 Pfam ABC-2 family transporter protein 308 528 - -
Tpr5g3020 921 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 5 921 IPR026082 GO:0016021|GO:0055085|GO:0140359
Tpr5g3020 921 PANTHER ABC TRANSPORTER A FAMILY PROTEIN 5 921 - -
Tpr5g3020 921 CDD ABC_subfamily_A 603 824 - -
Tpr5g3020 921 ProSitePatterns ABC transporters family signature. 738 752 IPR017871 GO:0005524
Tpr5g3020 921 Gene3D - 591 867 IPR027417 -
Tpr5g3020 921 Pfam ABC transporter 622 765 IPR003439 GO:0005524
Tpr5g3020 921 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 598 827 IPR027417 -
Tpr5g3020 921 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 599 836 IPR003439 GO:0005524
Tpr5g3020 921 SMART AAA_5 629 812 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g3020 Tpr-Chr5 53136662 53155154 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g3020 608 828 Calmodulin-binding Proteins AT2G36910 25.641 3.69e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g3020 - - gmx:100805474 1320.84