LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr5g3013	ATGTTGAATCATTTCCTTAGAAGAGCTTCAAGGATTTCATATCTTACCAAACACAATGTTCTTCCTGCTTTCAATTTTTCCAGGTCTGTCCATTCAATACCACTTGCCACAGTAGAAGCAGAAGAGATATCTGGTGCAAAGCCTGCTGAAGTTTTGAACTTGGTACAGGGTAAATGGATTGGATCATCAAACTGGAATACAGTTGTGGATCCTTTAAATGGGGAGCCATTTATTAAAGTTGCTGAAGTTGATGAAGCAGGCGTTCAGCCTTTTGTTGATAGCTTGACCAGCTGTCCCAAACATGGTTTGCACAATCCTTTTAAGGCACCAGAGAGATATCTTATGTACGGAGACATCTCTGCTAAGGCAGCTCACATGCTCTCTCTTCCTAAGGTTTCAGATTTCTTTGTAAGGCTAATACAGAGAGTTTCTCCAAAGAGTTATCAGCAGGCTTTTGCAGAAGTTTATGTGACACAAAAGTTTCTAGAGAACTTCTGCGGAGATCAGGTTCGTTTCTTGGCTAGGTCTTTTGCAGTACCTGGAAATCATCTTGGGCAGCAAAGTCATGGCTTCCGTTGGCCATATGGTCCGGTGGCAATTATTACTCCTTTTAATTTTCCCCTAGAGATTCCAGTCCTTCAATTAATGGGTGCACTTTATATGGGCAACAAGCCAGTCCTTAAAGTCGATAGCAAGGTGAGCATTGTTATGGAGCAAATGTTGCGCCTTCTTCATTCCTGTGGCTTACCTGTAGAAGATGTAGACTTCATAAATTGTGATGGAAAGACAATGAACAAGCTACTGCTAGAGGCAAATCCAAGAATGACCCTTTTCACTGGTAGTTCAAGAGTGGCAGAGAAGTTGGCTGTTGATTTGAAGGGCCGCGTTAAATTAGAAGATGCTGGATTTGATTGGAAAATATTGGGCCCTGATGTCCATCAGGAAGATTACACTGCATGGGTATGTGACCAGGATGCATATGCATGCAGCGGTCAGAAGTGTTCAGCACAATCATTGTTATTTATGCACGAGAACTGGTCTAAGACTTCGTTTATATCTAAGTTGAAAGAACTCGCTGAGAGAAGAAAGCTAGCAGACTTGACAATCGGCCCAGTCCTTACTTTTACAACTGATTCATTGCTTGAGCACACCAAAAATTTACTTGAGATACCAGGATCAAAGCTGCTCTTTGGGGGTGAGCCTTTGGAGGACCATTCGATTCCGCAAGTTTATGGTGCTATTAAACCAACTGCAGTTTATGTTCCCCTAGAAGAAATTGTGAAGGATAAGAATTATGACCTTGTGACAAAAGAAATATTTGGACCTTTCCAGGTTATTACTGACTACAAAGGCAGTCAACTACCAATTGTGTTGGAGATTTTGGAAAAAATGCATGCACACTTAACTGCCGCCGTAGTTTCAAATGATCCTTTATTCTTACAAGAAGTGATTGGGAAATCGGTAAATGGCACTACCTACGCAGGTCTAAGAGCAAGAACAACTGGAGCTCCACAAAACCACTGGTTTGGACCAGCCGGTGACCCTAGGGGTGCAGGAATCGGAACACCAGAGGCTATAAAACTTGTATGGTCTTGCCACAGAGAAATAATTTATGATTATGGACCAGTATCAAAGGATTGGGAAATTCCTCCTTCAACATGA	1662	0.42	MLNHFLRRASRISYLTKHNVLPAFNFSRSVHSIPLATVEAEEISGAKPAEVLNLVQGKWIGSSNWNTVVDPLNGEPFIKVAEVDEAGVQPFVDSLTSCPKHGLHNPFKAPERYLMYGDISAKAAHMLSLPKVSDFFVRLIQRVSPKSYQQAFAEVYVTQKFLENFCGDQVRFLARSFAVPGNHLGQQSHGFRWPYGPVAIITPFNFPLEIPVLQLMGALYMGNKPVLKVDSKVSIVMEQMLRLLHSCGLPVEDVDFINCDGKTMNKLLLEANPRMTLFTGSSRVAEKLAVDLKGRVKLEDAGFDWKILGPDVHQEDYTAWVCDQDAYACSGQKCSAQSLLFMHENWSKTSFISKLKELAERRKLADLTIGPVLTFTTDSLLEHTKNLLEIPGSKLLFGGEPLEDHSIPQVYGAIKPTAVYVPLEEIVKDKNYDLVTKEIFGPFQVITDYKGSQLPIVLEILEKMHAHLTAAVVSNDPLFLQEVIGKSVNGTTYAGLRARTTGAPQNHWFGPAGDPRGAGIGTPEAIKLVWSCHREIIYDYGPVSKDWEIPPST*	554

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Tpr5g3013	553	PANTHER	ALPHA-AMINOADIPIC SEMIALDEHYDE DEHYDROGENASE	16	552	IPR044638	GO:0004029
Tpr5g3013	553	PANTHER	ALDEHYDE/HISTIDINOL DEHYDROGENASE-RELATED	16	552	-	-
Tpr5g3013	553	Gene3D	Aldehyde Dehydrogenase; Chain A, domain 2	310	496	IPR016163	GO:0016620
Tpr5g3013	553	Gene3D	Aldehyde Dehydrogenase; Chain A, domain 1	44	304	IPR016162	GO:0016491
Tpr5g3013	553	ProSitePatterns	Aldehyde dehydrogenases cysteine active site.	327	338	IPR016160	GO:0016491
Tpr5g3013	553	CDD	ALDH_F12_P5CDH	53	541	-	-
Tpr5g3013	553	Pfam	Aldehyde dehydrogenase family	66	494	IPR015590	GO:0016491
Tpr5g3013	553	SUPERFAMILY	ALDH-like	53	520	IPR016161	GO:0016491

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr5g3013	Tpr-Chr5	53056113	53062559	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr5g3013	1	553	Aldehyde Dehydrogenase Gene Family	AT5G62530	80.396	0.0	957

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr5g3013	K00294		-	gmx:100806579	1001.5

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tpr5g3013	5	53056113	53062559	Tpr5g3013	5	53056113	53062559	ECH

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