Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g3010 ATGGAAGCTAACAAACTTAGATTGCTCTTTTTTTGTGTATGTTATCTTGCTATTTTCCCTACGTTCGAGGCTAACATAGCTCACTTCGACCCTTACTGGCAAAGTCGATCACATGAAGCTAAAAAGGCGGCACACAAGGCTTACAAGCCAAATCCTGTGAATGAAACTGCTAATTTCAATATGCAAGTCCACAAGGCTTTTGAAGTTTCCCATGGCACAAGGAGGAGTTTATTAAATCACAGAAAAAGGGGTCCGTGCGAAGCAACAAATCCCATCGATAGTTGTTGGAGATGCGATCCACATTGGGAAAAGAACCGCAAAAGGCTAGCAGATTGTGTTATTGGTTTTGGTCACGGCACAACAGGAGGCAAAGATGGCAGATTTTATGTTGTCACTGATCCATCTGACAATGATCTTGTCAACCCAAAACCGGGGACTTTGCGACATGCAGCCATTCAAACCGAGCCATTATGGATCATTTTTCAACATCATATGAATATTAAACTGAAGTCAGAGCTTATGCTGACCGATAATAAGACCATAGATGGACGCGGTGTAAACGTTCATATTAGTGGTGGTGCTCAAATAACAATGCAATATGTGAAAAACATTATCATTCACGGGTTACACGTTCATGATACTAAACCATGCAGTGGTGGCCTCATCAGAGACTCGTTGAGTCACTTTGGACAACGTTCGATGAGTGATGGTGATGGAATTTCAATGTTTGGAGTTTCTCATGTTTGGCTAGATCATATTTCATTGTGGAACTGTTCTGATGGTTTGATTGATGCCGTAGCAGGATCAACAGCTATTACCATTTCCAACTGCCATATGACACATCATAACGACGTAATTAACATCACATCTACTCACTATTTTGTTATGTTATTTGGAGCAAGTGATTCATTCCCAGGAGATCAAATTTCGCAAATAACTGTGGCTTTCAACCATTTTGGGAAAGGATTGATACAGAGGATGCCAAGATGCAGATGGGGTTTCTTTCATATTGTTAACAATGACTACACTCATTGGCTTATGTATGCCATTGGTGGTAGCACACATCCCACCATACTCAGCCAGGGTAACCGGTTTATCGCTCCTCCAAACCCAAATGCAAAAGAGGTGACAAAGAGAGATTATGCACCTGAAAGTGTGTGGAAGAAATGGAGTTGGAGATCAGAGAATGACTTGCTGATGAATGGAGCCTTCTTTGTTCAGTCCGGAACTAAGGCTGCAAATTTTCCTAAGTCAGACATCAAGGCAAAGCCTGGGAGTTATGCTGCAGCTCTTACTCGCAATGCCGGTTTTCTAAAATGTGAAGTAAACAAGCCATGTTAA 1341 0.4161 MEANKLRLLFFCVCYLAIFPTFEANIAHFDPYWQSRSHEAKKAAHKAYKPNPVNETANFNMQVHKAFEVSHGTRRSLLNHRKRGPCEATNPIDSCWRCDPHWEKNRKRLADCVIGFGHGTTGGKDGRFYVVTDPSDNDLVNPKPGTLRHAAIQTEPLWIIFQHHMNIKLKSELMLTDNKTIDGRGVNVHISGGAQITMQYVKNIIIHGLHVHDTKPCSGGLIRDSLSHFGQRSMSDGDGISMFGVSHVWLDHISLWNCSDGLIDAVAGSTAITISNCHMTHHNDVINITSTHYFVMLFGASDSFPGDQISQITVAFNHFGKGLIQRMPRCRWGFFHIVNNDYTHWLMYAIGGSTHPTILSQGNRFIAPPNPNAKEVTKRDYAPESVWKKWSWRSENDLLMNGAFFVQSGTKAANFPKSDIKAKPGSYAAALTRNAGFLKCEVNKPC* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g3010 446 PANTHER PECTATE LYASE 18-RELATED 6 446 IPR045032 GO:0030570
Tpr5g3010 446 PRINTS Pollen allergen Amb family signature 112 129 IPR018082 -
Tpr5g3010 446 PRINTS Pollen allergen Amb family signature 136 161 IPR018082 -
Tpr5g3010 446 PRINTS Pollen allergen Amb family signature 172 188 IPR018082 -
Tpr5g3010 446 PRINTS Pollen allergen Amb family signature 326 345 IPR018082 -
Tpr5g3010 446 PRINTS Pollen allergen Amb family signature 348 367 IPR018082 -
Tpr5g3010 446 PRINTS Pollen allergen Amb family signature 390 414 IPR018082 -
Tpr5g3010 446 Gene3D - 89 439 IPR012334 -
Tpr5g3010 446 PANTHER PECTATE LYASE 6 446 - -
Tpr5g3010 446 SMART amb_all 164 371 IPR002022 -
Tpr5g3010 446 Pfam Pectate lyase 168 365 IPR002022 -
Tpr5g3010 446 SUPERFAMILY Pectin lyase-like 80 440 IPR011050 -
Tpr5g3010 446 Pfam Pectate lyase, N terminus 25 77 IPR007524 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g3010 Tpr-Chr5 53040393 53042477 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g3010 1 446 Polysaccharide Lyase AT3G01270 52.990 4.29e-179 507
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g3010 K01728 - gmx:100801864 660.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3197 6 34490125 34492809 Tpr5g3010 5 53040393 53042477 ECH
Tpr2g0372 2 4448766 4451084 Tpr5g3010 5 53040393 53042477 ECH
Tpr2g1910 2 22836851 22839747 Tpr5g3010 5 53040393 53042477 ECH
Tpr5g3010 5 53040393 53042477 Tpr5g3010 5 53040393 53042477 ECH