Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g3009 ATGACTCAACGCGAACCACTTTTCTTCACTATTATTATTAAACGAGCCACAAATGGACCAAATCCTGAGAAGTTCTTAGGTTATAAAGAAGGGATCTCTTGTGATAATAATGTTGTAAAGAGGAAAGACACCGGAGGAAGTTCTAGTAGCTGTTCAAAAGTACATTTTTTTTATGGAGATCGTGATGTGATGAAATCTAACACATTCAAGGTTTTGGTAAATGGCAAAATCCCGTTTGTACCAAAGGAGTTTATGAAAAAAGGATGTCGTCAACATGATGTGGTGTTGAAAATGGGGGGAAAGTCGTGGTTGGTAAAAGTAAAATCTTGCAAGTTCGATAAAGGTTGGAGTCAATTTGTGAAAGAATGCAAAATAGAGATTGGAGATACTTGTCTCTTTGAGTTGATTGATGACAAAAAATTTGTGTTTCAAGTTTCAATCGCTGGAAAAAATCATTGA 459 0.3551 MTQREPLFFTIIIKRATNGPNPEKFLGYKEGISCDNNVVKRKDTGGSSSSCSKVHFFYGDRDVMKSNTFKVLVNGKIPFVPKEFMKKGCRQHDVVLKMGGKSWLVKVKSCKFDKGWSQFVKECKIEIGDTCLFELIDDKKFVFQVSIAGKNH* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g3009 152 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 73 148 - -
Tpr5g3009 152 SMART B3_2 68 151 IPR003340 GO:0003677
Tpr5g3009 152 CDD B3_DNA 69 147 IPR003340 GO:0003677
Tpr5g3009 152 PANTHER B3 DOMAIN-CONTAINING 73 148 - -
Tpr5g3009 152 SUPERFAMILY DNA-binding pseudobarrel domain 77 149 IPR015300 -
Tpr5g3009 152 Pfam B3 DNA binding domain 79 147 IPR003340 GO:0003677
Tpr5g3009 152 ProSiteProfiles B3 DNA-binding domain profile. 63 151 IPR003340 GO:0003677
Tpr5g3009 152 Gene3D - 40 151 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g3009 Tpr-Chr5 53033443 53034718 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g3009 15 146 REM Transcription Factor Family AT1G49480 27.815 3.64e-08 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tpr5g3009 B3 1.2e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g3009 - - mtr:MTR_1g035490 166.392