Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g3008 ATGTCATTTCAACATTACCCACAATTTCATAGGATAATATTGCAAGATAAGAACCTTAGGATTCCCAAGAAATATGTGGAGAAATTTTGGAAAGGAATATCGAACCCAATATTCCTTAGATTCCCAAATGGGGTTCAACAAGAAATATTTTGGGTGAAGAAAAGTAATAGTGAGATTTGGTTTCAAAAAAATTGGGACCAATTTGCAAAGTCTCTAAAATATGGAAATCTCTTAACTTTTAAATACATAGGTGGATCATGTTTTAAGGTTAAGATATTTTGTGCCAATGCTTTAGAAATAAACTATTCCAATATAAAATCCATAGTAGATGAAGAACAAGTTGTTGAAGCTGCAGTAGAAGAAGCTAAAGAAATTGTTGAAGTGAGTGATGAGAGTGAAATATACATGCAAGCTCAAAAGACAGGAAATGGCAAGAGAAAAATTAATATGGATTTAGATTCTACTCAACAAAAATTATCAGGTAGTAATAGAGGAGGCATGGTGAAGAAGACTAAAAAATGCTCAACAACTGCTGCGGCTATTACTATGAGAGACAATAATCAGAATCCCTTTTTTGATGTTATAATGACAAAAACTTATGCTGATGGCAAATTCTTGAGAATACCAAAGAAGTTTTCAAGAGAACACTTGAACAATTTTCAAGGAATTGCAACCCTATTTGTTGGTGAGGAAATGGCTATGGAAGTGAACATTAGGTCATCTATTATCGGTGTCGGTTGGAAGTTATTTAGTTAA 756 0.328 MSFQHYPQFHRIILQDKNLRIPKKYVEKFWKGISNPIFLRFPNGVQQEIFWVKKSNSEIWFQKNWDQFAKSLKYGNLLTFKYIGGSCFKVKIFCANALEINYSNIKSIVDEEQVVEAAVEEAKEIVEVSDESEIYMQAQKTGNGKRKINMDLDSTQQKLSGSNRGGMVKKTKKCSTTAAAITMRDNNQNPFFDVIMTKTYADGKFLRIPKKFSREHLNNFQGIATLFVGEEMAMEVNIRSSIIGVGWKLFS* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g3008 251 PANTHER B3 DOMAIN-CONTAINING 5 251 - -
Tpr5g3008 251 Gene3D - 168 251 IPR015300 -
Tpr5g3008 251 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 5 251 - -
Tpr5g3008 251 CDD B3_DNA 19 94 IPR003340 GO:0003677
Tpr5g3008 251 Gene3D - 1 97 IPR015300 -
Tpr5g3008 251 SMART B3_2 9 96 IPR003340 GO:0003677
Tpr5g3008 251 SUPERFAMILY DNA-binding pseudobarrel domain 18 103 IPR015300 -
Tpr5g3008 251 SUPERFAMILY DNA-binding pseudobarrel domain 186 250 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g3008 Tpr-Chr5 53033120 53039740 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g3008 7 231 B3 DNA Binding Superfamily AT3G18990 25.614 6.19e-15 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g3008 - - mtr:MTR_1g035640 296.204