Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g3000 ATGGCGGGTGGAAGAGTTTTCACAAATGCTCCTGCAAATAATATTTCAAATATGAATATGTTGTTTCACAATCAACAACAAATTCCTCGTGCAAACAACACTTCTCAACAACCTCTTGATTCTCTTTTCCTTTCTTCTTCTTCTTCCGTTCCTTTCTTCGGTTCAAGATCTATGGTGAGTTTTGAAGATGTTCAAGGAGGGAAAAGGTGCAATAGGTCTTTCTTCACCGGATTTGACCTCGATGAAAATGGAGACGATGAGATGGATGAGTACTTTCATCAATCGGAGAAGAAGCGGCGTCTCTCGGTGGATCAAGTTCAATTTCTTGAGAAAAGCTTTGAAGTTGAGAACAAGCTTGAACCAGATAGGAAAATCAAGATAGCTAAAGACCTTGGTTTGCAGCCACGACAAGTTGCTATTTGGTTTCAGAACCGCCGTGCAAGGTGGAAGACCAAACAGCTTGAGAAGGATTATGAAACTCTTAATGATAGCTATGAGTCTCTTAAAACTGATTATGATAACATCCTCAAGGAGAAAGAGAGATTACAAGCTGAGGTGGCAAGCCTAAGTGAAAAGGTACTTGCAAAAGAGAAATTACAAGAGGGAAAATTCAAACAAGGTGAAAGTGAAACAAAAGAATTACTGCAAAAACCACTAATGAATTCAGTTTCTGATGAGGGTGAAGGATCCAAATTGTCAATTGTTGAAACTTGTAATAATAATAATAATAACAAAATTGAAGATATTAGTTCAGCAAGGAGTGACATATTGGATTGTGACAGCCCACGTTACACGGATGGAGTGTTGGAGACATGTGATTCATCTTATGTATTTGAACATGAATATCAATCTGATCTATCATCACAAGATGAAGAAGACAATTTATTGCCTCCTTATAACATCTTTACAAAACTTGAAGATGTTAATTACTCCGACCCGCCACACGGTTCGTCTAGTTTTGGATTTCAAGAGGAAGATCATCATACTCTTTGGCCGTGGTCTAACTACTAG 1011 0.3808 MAGGRVFTNAPANNISNMNMLFHNQQQIPRANNTSQQPLDSLFLSSSSSVPFFGSRSMVSFEDVQGGKRCNRSFFTGFDLDENGDDEMDEYFHQSEKKRRLSVDQVQFLEKSFEVENKLEPDRKIKIAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYETLNDSYESLKTDYDNILKEKERLQAEVASLSEKVLAKEKLQEGKFKQGESETKELLQKPLMNSVSDEGEGSKLSIVETCNNNNNNKIEDISSARSDILDCDSPRYTDGVLETCDSSYVFEHEYQSDLSSQDEEDNLLPPYNIFTKLEDVNYSDPPHGSSSFGFQEEDHHTLWPWSNY* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g3000 336 Coils Coil 151 199 - -
Tpr5g3000 336 SUPERFAMILY Homeodomain-like 84 154 IPR009057 -
Tpr5g3000 336 ProSiteProfiles 'Homeobox' domain profile. 92 152 IPR001356 GO:0003677
Tpr5g3000 336 PRINTS Lambda-repressor HTH signature 123 132 IPR000047 GO:0003677
Tpr5g3000 336 PRINTS Lambda-repressor HTH signature 132 148 IPR000047 GO:0003677
Tpr5g3000 336 SMART HOX_1 95 156 IPR001356 GO:0003677
Tpr5g3000 336 Pfam Homeobox associated leucine zipper 152 193 IPR003106 GO:0006355|GO:0043565
Tpr5g3000 336 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-54 24 332 - -
Tpr5g3000 336 ProSitePatterns 'Homeobox' domain signature. 127 150 IPR017970 GO:0000981|GO:0006355
Tpr5g3000 336 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 24 332 IPR045224 GO:0003700
Tpr5g3000 336 CDD homeodomain 97 153 IPR001356 GO:0003677
Tpr5g3000 336 Pfam Homeodomain 97 150 IPR001356 GO:0003677
Tpr5g3000 336 Gene3D - 80 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g3000 Tpr-Chr5 52983937 52986437 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g3000 54 276 Homeobox Transcription Factor Family AT3G01470 41.256 1.59e-42 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Tpr5g3000 Homeodomain 5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g3000 - - mtr:MTR_4g107650 506.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g3000 5 52983937 52986437 Tpr5g3000 5 52983937 52986437 ECH