Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2998 ATGGAAATCACCATTGTAGCTTGTGCTTTCTTACTGATTTTCACAACATTTTTCAACCCTTCTTCTCTTGCTCTCACCCAAGATGGTCAAACGTTGTTGGAGATCAAAAACACTTTGAATGACACTAAGAATGTTCTTAGCAACTGGCAAGAGTTTGATGAGTCTCATTGTGCATGGACTGGAATCTCATGTCATCCTGGTGATGAACAAAGAGTTCGCTCAATAAATCTACCATATATGCAGCTTGGGGGAATAATATCTCCCAGCATTGGTAAACTGAGTAGACTTCAGAGATTGGCGCTTCATCAGAATGGCTTGCATGGAATCATTCCTACTGAGATTACCAATTGTACTGAGCTTAGAGCCCTGTACTTGAGGGCTAATTTTTTCCAAGGAGGGTTACCAGCTGGCATCGGAAACCTTTCATTTTTAAATATATTGGATGTATCAAGCAATGGATTAAAAGGATCTATTCCTTCCTCTATTGGTCGTCTCTCACATTTGCAAGTTTTGAACCTGTCTACCAATTTCTTTTCTGGTGAAATCCCTGACATTGGAGTACTAAGCACCTTCCAGAAGAACTCGTTCTTTGGCAATTCAGATCTTTGTGGAAGGCAACTAGAAAAGCCATGTCGAACATCACTTGGTTTCCCTGTGGTGATACCACATGCCGAAAGTGACGAAGCTGCAGTCCCTCCTACTACCAAAAGATCTTCACATTACATGAAGGCTGTGCTAATTGGGGCAGTGGCAACTTTGGGTCTCGCACTTATCATAACCCTTTCATTACTCTGGATTCGTTCGACATCAAAGAAGGAAAGAGCTGCTAAGAAATACATAGAAGTCAAGAAGCAAGTTGATCCATCAGCTAGCGCTAAACTTATTACGTTCCATGGTGATATGCCATACACATCATCTGAAATCATAGAAAAGCTGGAGTCTCTAGATGAAGAGGATATAGTAGGGTCAGGAGGATTCGGTACTGTTTACCGAATGGTGATGAATGATATTGGTACATTTGCTGTTAAGCGAATTGACCGAAGCCGGGAAGGGTCTGATCAAGTGTTTGAAAGGGAACTAGAGATCTTGGGCAGCATCAAGCACATAAATTTAGTAAACCTACGTGGTTACTGCAGGCTACCTTCTTCAAGGCTACTTATCTATGATTATGTGGCCTTAGGCAGCTTAGATGATCTCTTGCATGAAAATACCGAACGACAACCCTTGAATTGGAATGATCGGCTAAAGATAACCCTTGGTTCTGCCCGGGGTTTGGCATACTTGCACCATGAATGTTCCCCGAAAATTGTGCATCGTGACATAAAGTCTAGCAACATCCTTCTTAATGAAAACATGGAGCCTCACATCTCTGATTTTGGTCTTGCAAAGCTCTTGGTTGATGAAGATGCACATGTTACCACGGTGGTTGCTGGCACATTTGGCTATTTGGCACCAGAGTATCTACAAAGTGGGAGAGCCACTGAGAAGTCAGATGTATACAGCTTTGGAGTTTTATTACTCGAACTTGTAACTGGAAAGAGGCCTACGGATCCTTCCTTTGTCAAGAGAGGCTTAAATGTTGTTGGTTGGATGAACACATTATTGAAAGAAAACAGATTGGAAGACGTGGTTGACAGAAGATGCAGTGGTGTCGATGCTGAAACTCTTGAAGTAATTTTGGAGCTAGCAGCAAGATGTACTGATTCAAATGCAGATGACCGTCCATCGATGAATCAAGTATTGCAGTTGCTGGAACAAGAGGTCATGTCTCCTTGTCCAAGTGAATTTTACGAGTCCCATTCAGATCACTGA 1812 0.4216 MEITIVACAFLLIFTTFFNPSSLALTQDGQTLLEIKNTLNDTKNVLSNWQEFDESHCAWTGISCHPGDEQRVRSINLPYMQLGGIISPSIGKLSRLQRLALHQNGLHGIIPTEITNCTELRALYLRANFFQGGLPAGIGNLSFLNILDVSSNGLKGSIPSSIGRLSHLQVLNLSTNFFSGEIPDIGVLSTFQKNSFFGNSDLCGRQLEKPCRTSLGFPVVIPHAESDEAAVPPTTKRSSHYMKAVLIGAVATLGLALIITLSLLWIRSTSKKERAAKKYIEVKKQVDPSASAKLITFHGDMPYTSSEIIEKLESLDEEDIVGSGGFGTVYRMVMNDIGTFAVKRIDRSREGSDQVFERELEILGSIKHINLVNLRGYCRLPSSRLLIYDYVALGSLDDLLHENTERQPLNWNDRLKITLGSARGLAYLHHECSPKIVHRDIKSSNILLNENMEPHISDFGLAKLLVDEDAHVTTVVAGTFGYLAPEYLQSGRATEKSDVYSFGVLLLELVTGKRPTDPSFVKRGLNVVGWMNTLLKENRLEDVVDRRCSGVDAETLEVILELAARCTDSNADDRPSMNQVLQLLEQEVMSPCPSEFYESHSDH* 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2998 603 SUPERFAMILY L domain-like 25 188 - -
Tpr5g2998 603 PANTHER LRR RECEPTOR-LIKE KINASE 2 603 - -
Tpr5g2998 603 PANTHER RECEPTOR-LIKE PROTEIN 55 2 603 - -
Tpr5g2998 603 Pfam Protein kinase domain 317 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr5g2998 603 ProSitePatterns Protein kinases ATP-binding region signature. 321 343 IPR017441 GO:0005524
Tpr5g2998 603 ProSiteProfiles Protein kinase domain profile. 315 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr5g2998 603 SMART serkin_6 315 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr5g2998 603 SUPERFAMILY Protein kinase-like (PK-like) 297 585 IPR011009 -
Tpr5g2998 603 Pfam Leucine rich repeat N-terminal domain 27 64 IPR013210 -
Tpr5g2998 603 Gene3D Ribonuclease Inhibitor 25 213 IPR032675 -
Tpr5g2998 603 Gene3D Transferase(Phosphotransferase) domain 1 392 594 - -
Tpr5g2998 603 Gene3D Phosphorylase Kinase; domain 1 275 390 - -
Tpr5g2998 603 ProSitePatterns Serine/Threonine protein kinases active-site signature. 436 448 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2998 Tpr-Chr5 52971645 52976376 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2998 10 593 Receptor kinase-like Gene Family AT2G35620 48.976 0.0 562
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Tpr5g2998 Pkinase 1.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2998 - - gmx:100803920 1033.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2998 5 52971645 52976376 Tpr5g2998 5 52971645 52976376 ECH