Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2986 ATGACCCTTAAGGGTGGTACAACACAGGCTTGTGCAGCATGCAAATTCCAGAGAAGAAAATGCACACCTGAGTGCCTTTTAGCTCCATATTTCCCTGCAGACCAACCAAAAATATTTCTCAATGTTCACAAACTATTTGGAGTTAGCAACATTGTCAAAATACTAAAATATTTGGAACCTAGTCAGAAAAAAGTAGCCATGGACTCTATTATCATTCAAGCTAATTATAGAGATAAGTATCCTGTGCATGGATGTTGGGAGGAAATTTGCAGGTTACAATATCAAATATGGTTGATGGAAGAAGAACTTCATGTTGTTTATCAACAGCTTGAAATTTGTAGGCAACAACAACAACAACAGTTACCTCATGATGATGTGACTTCACAGTTAGAATTGGGAATGGCGCCGCGTTCGTCTAATGCGCTTGCACTGTTTAATCAAACTCCACAACCACAGAGTTATAATATTAACAACAATAATACAGTGGCTGCTCCTTTGTCTGTATCTCAGCAACATTCCTACTCCAACAGCAATAGTGTGGATTATAATAACTCACCCCTTTACATGGATTCAAAGGATAATGCTACAAATCCTAATTTGTGGATTCAGTGCCCTTACACAAGTAACAATAGCAATTCAATAACAATGCAACCTCATCAGTTGGTTGCCTCAGAGTCACAACCACTGTCATCTGTCCAACAAGGAGTTGTTGAAGATAATTATGATGAAATGCATTCATTTTTTGATACAGTTGATGATAGGCAATCATACATTTATTCTAAGGAGGCTTATGAATCAAGTTCGGAAGAATCACTGAAAGATACAAGAAAGTGCACAGAGCATGTTTCTGAGAATGAACTGAAGAGTGCAGCTGCTTGTTTCAGCCTTACCAGTGTCAATTGA 903 0.3798 MTLKGGTTQACAACKFQRRKCTPECLLAPYFPADQPKIFLNVHKLFGVSNIVKILKYLEPSQKKVAMDSIIIQANYRDKYPVHGCWEEICRLQYQIWLMEEELHVVYQQLEICRQQQQQQLPHDDVTSQLELGMAPRSSNALALFNQTPQPQSYNINNNNTVAAPLSVSQQHSYSNSNSVDYNNSPLYMDSKDNATNPNLWIQCPYTSNNSNSITMQPHQLVASESQPLSSVQQGVVEDNYDEMHSFFDTVDDRQSYIYSKEAYESSSEESLKDTRKCTEHVSENELKSAAACFSLTSVN* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2986 300 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
Tpr5g2986 300 PANTHER LOB DOMAIN-CONTAINING PROTEIN 27-RELATED 7 248 - -
Tpr5g2986 300 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Tpr5g2986 300 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 7 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2986 Tpr-Chr5 52866252 52867841 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2986 1 263 AS2 family AT3G47870 38.961 4.45e-52 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tpr5g2986 LOB 6.2e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2986 - - lang:109357116 381.333
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2986 5 52866252 52867841 Tpr5g2986 5 52866252 52867841 ECH