Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2985 ATGGGAGGCGGAGATCCTTCCTTGTCGGATATGGAGGAAGAGGAGGAGGAAAACGATGTGAAGGTGAACGATTCAGTTGACATTCTTTCAACATTTCGAATCCTTGATGCTCCTATACTTTTGTTCGTTTGTTTCCATAAAGCGCTCCGTTTTGAACTCGATCAGCTTCGTTTATTCGCTGATACGGCGTCGTTGGAGGATGATCCGCATCGTTACCGTGAATTAGTTGTTAAGCTTCAACAGAGATTTCAGTTTCTGAAAATAGCTCTTAAGTATCATTGTGCTGCTGAAGACGAGATTATCTTCCATGCACTGGATACACATGTAAAAAATGTTGCAAGTACATATTCCCTTGAACATAATAGCACCAATGGGATGTTTGATTCTATTTTACACTTCTTGGATGAGCTGATGGCCCCTAGTGATAATATTTTCAAGCTGTTCCGAGAACTTGTATACTGCATTGATATCTTGCAAACCTCCATCTACCAACATATGCTGAAAGAAGAAGAGCAAGTTTTTCCTCTGTTGATCCAAAAATTGTCTACTAAAGAACAAGCCTCACTTGTGTGGCAGTTCATATGTAGTGTTCCTATAATGTTGCTGGAAGAAATTTTGCCATGGATGGTATCTTTCCTTTCAGCAGATAAACAAGCAGAAGTTACTCAGTGTTTTAATGAAATTGCACCAATGGAAAGAGCACTGCAAGAGGTTTTGGTTTCTTGGCTTGGAAGCAACAAACAAACCCTCACCCAGACATATTTTCAGAGTGAAGAACTTCAAGGCTCTCATGGATTCCTACGTATAGAAAGATCATCTGGGCCGAGTTCTTGCAATGAGAACTCCAAAGAAATTTCAAGTCAGAGGAAAGTGAATGGAAAAGAAACAGAAGATGGGGTGAACCAAGTTAAAGTTCTTCATCTTTGGCATAATGCCATCAAGAAAGATTTGAAAGAAATTCAGCAAGAACTTTATCTAATGAGAAGTTCCAGCTGTTTTCAAAATTTAGACTCAATACTTATCCAACTAAAATTCTTGGCCGATGTCCTCGTCTTTTACAACAATGCTTTGAAGAAATTCCTTCATCCTGTACTGAACAAACTTTACGATGACCGGTTTTCCAAGTCTACTGAACATTTTCTAGGTCAAAGTCACATTGAAGATATACAACAGTTGCTATTCTATAACTCAGAAAATGGAATGCCTTTGACCAAATTTGTAGAGAAGCTTTGCGGAAAACTTGAATCATTTGTATCAGCAGTCAACAAACAATTTTCTCTTCAAGAAATTGAGGTGTTTCCTATCTTTAGAAAGAACTGCAGTAATGGAACACAAGTGAGGCTTCTAAGCTTGAGCTTGCATATGATGCCACTTGGGTTACTAAAATGTGTTATAACTTGGTTCTCAGTTCACTTGTCTGAACAAGAATCCAGGTCCATTCTCTATTGCATAAAGGAAGGAAGTAATTCTGTCAGTAAAGCTTTTGCACCGTTGTTACATGAATGGTTCCGCATCGGTTATTCAGGTAAAACCTCAATGGAAAAATTCCGACAGGACCTGCAGCATATGTTCAAAAGAAGACACTCTTTTTCATCTGAGAAAATGAAGGAAGTTTGTGAGGATTCATTCTTAAATTCCAACAAGCAGCCACATAAAAGTTGTGGAAAGAATTGTATGTCCTATTCCTCATCTTCTGGATCCAAAAATGCGAACAAGTATGAGACACCATACTCCACAGGAATTAATATGCACATATTTTTCCCTGCCACTGCTATGAAGTTAAATCAGCATCCAAGATTTCATGCAGAAAATCCTTCTTCTGTTTCCTTTCTTAATGATCCAAAACCAATTGACCTGATCTTCTTCTTTCACAAAGCTATTAAGAAAGATTTGGATTACCTAGTTCTTGGCTCAGCTCAGTTAGAGGAACATGGTGAGTTGGTTACAGATTTCCGCAAACGATTCCATCTCATATGTTTTCTGCATCAAATCCATAGTGATGCAGAGGACGAGATAGTTTTTCCAGCCTTGGAGGCAATAGGTCAAGGCAAAAACATTAGCCTTGCCTACACCTTTGATCACAAACATGAAGTTGAACACTTCAGCAAAATATCTCGCATTCTTGATAAGATGGCTGTATTAGATCTTTCGGTTTCTACTACTGATTCAAAGATAAGGGACAAGAGACTGATAAGGCGTCGTGATTTAATCAGGAAGCTGCAAGAAAGGTGCAAATCAATGCATAAGTTACTTTCTGATCATATAAACCGCGAGGAAATAGAAATTTGGCCAATAATTAGAGAGTTCTTCTCGAACCGGGAGCAAGGGAAGATTGTAGGATGCATGCTTGGAAGAATAAGAGCAGAAATATTACAAGATATGATACCTTGGTTAATGTCATCTTTAACACAGGAAGAGCAACATGTTTTAATGTTCTTATGGTCCATGGTTACTAAGAATACAATGTTTGATGAATGGTTAAGGGAATGGTGGAATGGGTACAGTTTAGCCAAGGCAGGAGATGGATCAAATGATGCCCCTCTAGAAAATGTTGAGCCACTTGAGATTATTTCCAAATATTTGTCTGAAGAAGTTCTTAATGAATTACAAGCAGAATCATCTGCCAACGAAAGATTATTTTTTTTGCAGAAAGATCATATTGGCAATAATTTTGAGCTGTCCAACTACAACATTGATGACAGTGTTGAGGTTAATTATGCAGAACAAAATTTTAGTCAATGTTCAAAATGCACAAATCAAGTTCATGATATTAAGAAGCATGTCTGCCATGAAGTACCAGATACCATAAGTCCGATAGATCGTGAAAGTCGGTCGATTCAATATTTTGACAAGTCTGGGCATTATGACCGACTTCTGAAATTGAGTCAAAATGATCTGGAGAAGGTAATAAGAAGGGTATCTCGTGACTCGTGCCTAGATCCTCAGAAAAAGTCATACATAATACAGAGCCTACTAATGAGCCGTCGGATTATTAGACAGCAGATATCTTCTATGGAAGCCAATATCAAAAGCGATGGACAAGAATTCCCTGGGAAACATCCATCTTACAGGGACCCTCTCAAACAAATCTATGGTTGCAAACACTACAAGAGAAATTGTAAGCTTTTTGCCCCCTGTTGCAACCAACTTCATGCTTGCATACATTGCCATGATGAGGTATCAGATCATTCAATTGACAGGAAATCTATTACGAAGATGATGTGTATGAAGTGCTTGGTGATTCAACCAGTCAATGCTACATGCTCGTCAGTTTCTTGCTGTAATTTATCCATGGCAAAATATTACTGCAGGATCTGCAAATTATTTGATGATGAAAGGGAAATTTACCACTGTCCTTATTGCAACTTATGCCGAGTTGGAAAGGGTTTGGGTGTCGACTTTTTTCATTGTATGAGTTGCAATGCTTGTATGTCTCGTTCTCTCATGACACATACATGCAGGGAGAAATCTTTAGAGGAAAATTGTCCGATTTGTCATGAATATATATTCACATCCTGCTCTCCAGTAAAAGCCCTACCATGCGGTCATGTGATGCACTCAACATGTTTTCAGGAATATACTTGCTTTAATTATACCTGCCCAATATGTAGCAAGTCACTTGGAGACATGCAGGTTTATTTTAGGATGTTAGATGCGCTATTGGCCGAGGAGAAAATGTCTGACGAGTTTTTGGGTCAAACTCAGGTTATATTATGTAATGACTGTGAAAAGAAAGGAGCAGCTCCCTTCCACTGGCTTTACCATAAATGCCCTTGTTGTGGTTCCTACAACACTAGAGTTCTATGA 3807 0.3851 MGGGDPSLSDMEEEEEENDVKVNDSVDILSTFRILDAPILLFVCFHKALRFELDQLRLFADTASLEDDPHRYRELVVKLQQRFQFLKIALKYHCAAEDEIIFHALDTHVKNVASTYSLEHNSTNGMFDSILHFLDELMAPSDNIFKLFRELVYCIDILQTSIYQHMLKEEEQVFPLLIQKLSTKEQASLVWQFICSVPIMLLEEILPWMVSFLSADKQAEVTQCFNEIAPMERALQEVLVSWLGSNKQTLTQTYFQSEELQGSHGFLRIERSSGPSSCNENSKEISSQRKVNGKETEDGVNQVKVLHLWHNAIKKDLKEIQQELYLMRSSSCFQNLDSILIQLKFLADVLVFYNNALKKFLHPVLNKLYDDRFSKSTEHFLGQSHIEDIQQLLFYNSENGMPLTKFVEKLCGKLESFVSAVNKQFSLQEIEVFPIFRKNCSNGTQVRLLSLSLHMMPLGLLKCVITWFSVHLSEQESRSILYCIKEGSNSVSKAFAPLLHEWFRIGYSGKTSMEKFRQDLQHMFKRRHSFSSEKMKEVCEDSFLNSNKQPHKSCGKNCMSYSSSSGSKNANKYETPYSTGINMHIFFPATAMKLNQHPRFHAENPSSVSFLNDPKPIDLIFFFHKAIKKDLDYLVLGSAQLEEHGELVTDFRKRFHLICFLHQIHSDAEDEIVFPALEAIGQGKNISLAYTFDHKHEVEHFSKISRILDKMAVLDLSVSTTDSKIRDKRLIRRRDLIRKLQERCKSMHKLLSDHINREEIEIWPIIREFFSNREQGKIVGCMLGRIRAEILQDMIPWLMSSLTQEEQHVLMFLWSMVTKNTMFDEWLREWWNGYSLAKAGDGSNDAPLENVEPLEIISKYLSEEVLNELQAESSANERLFFLQKDHIGNNFELSNYNIDDSVEVNYAEQNFSQCSKCTNQVHDIKKHVCHEVPDTISPIDRESRSIQYFDKSGHYDRLLKLSQNDLEKVIRRVSRDSCLDPQKKSYIIQSLLMSRRIIRQQISSMEANIKSDGQEFPGKHPSYRDPLKQIYGCKHYKRNCKLFAPCCNQLHACIHCHDEVSDHSIDRKSITKMMCMKCLVIQPVNATCSSVSCCNLSMAKYYCRICKLFDDEREIYHCPYCNLCRVGKGLGVDFFHCMSCNACMSRSLMTHTCREKSLEENCPICHEYIFTSCSPVKALPCGHVMHSTCFQEYTCFNYTCPICSKSLGDMQVYFRMLDALLAEEKMSDEFLGQTQVILCNDCEKKGAAPFHWLYHKCPCCGSYNTRVL* 1269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2985 1268 SUPERFAMILY RING/U-box 1161 1212 - -
Tpr5g2985 1268 CDD Hr-like 45 175 - -
Tpr5g2985 1268 Pfam Zinc-ribbon 1209 1266 IPR039512 -
Tpr5g2985 1268 CDD Hr-like 618 764 - -
Tpr5g2985 1268 MobiDBLite consensus disorder prediction 1 20 - -
Tpr5g2985 1268 CDD RING-H2_Pirh2 1161 1204 - -
Tpr5g2985 1268 ProSiteProfiles Zinc finger CTCHY-type profile. 1098 1161 IPR017921 -
Tpr5g2985 1268 SUPERFAMILY Zinc hairpin stack 1099 1154 IPR037275 -
Tpr5g2985 1268 SUPERFAMILY CHY zinc finger-like 1024 1090 IPR037274 GO:0008270
Tpr5g2985 1268 SMART ring_2 1162 1203 IPR001841 -
Tpr5g2985 1268 Pfam Hemerythrin HHE cation binding domain 46 177 IPR012312 -
Tpr5g2985 1268 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1155 1206 IPR013083 -
Tpr5g2985 1268 ProSiteProfiles Zinc finger CHY-type profile. 1026 1095 IPR008913 GO:0008270
Tpr5g2985 1268 ProSiteProfiles Zinc finger RING-type profile. 1162 1204 IPR001841 -
Tpr5g2985 1268 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 30 1268 - -
Tpr5g2985 1268 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 30 1268 - -
Tpr5g2985 1268 MobiDBLite consensus disorder prediction 272 286 - -
Tpr5g2985 1268 Gene3D - 1233 1268 - -
Tpr5g2985 1268 Gene3D nmb1532 protein domain like 300 450 - -
Tpr5g2985 1268 Gene3D nmb1532 protein domain like 38 195 - -
Tpr5g2985 1268 Gene3D nmb1532 protein domain like 612 784 - -
Tpr5g2985 1268 MobiDBLite consensus disorder prediction 272 293 - -
Tpr5g2985 1268 Pfam CHY zinc finger 1033 1108 IPR008913 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2985 Tpr-Chr5 52854236 52864978 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2985 605 835 C2H2 Transcription Factor Family AT3G18290 26.271 1.71e-15 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2985 K16276 - gmx:100802706 1993.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2985 5 52854236 52864978 Tpr5g2985 5 52854236 52864978 ECH