Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2976 ATGGATGCGAAAGATATCCTTGGTTTACACAAAAACTCATTCCCATCTTCTCTTGAAAAAAAATCTCGACCTCCCAAAGAATCTCACAGAAAACCAGATGGCATTTCACGCGAGGTTTATGCTCTTACCGGTGGAATGCCACCTCTTATGCCTTCCATTCATTCATCCCAATTGAAGAAAAAACCTCCTCCTCCCGAAAAGGTTACTTGGCAATGGCTTCCTTTCACCAATTCTGCTCGTAAAGATGATCTTCATCTGTACCATTGGGTTCGAGTAGTCAATGGTGTTCTACCGACTGGGGACTACTCTTTTGCCAAGTATAACAAGTCTGTTGACATTATTAAATACACAGACGAGGAGTATGAAAAGTATTTGACAGATCCTATGTGGACCAAAGAGGAAACAAATGAACTATTCGATTTGTGTGAGAGGTTCGATCTCCGTTTTGTTGTGATAGCTGATAGGTTCCCATCATCTCGGACTGTAGAGGAGTTAAAGGATCGATATTATAGTGTGTTGCGGGCTATATTACTTGCTAGGGCTGCATCTTCTGGGGACGTTGCAACACATCCTGTCATTAAGGATCCATATAATGTTTCACAAGAAATGGAGCGAAAACGGGCACTGTCCATGGTCCTCTCTCAAACGAGACAACAAGAGAAAAGAGATGAAGAGGTTCTTATTGAAGCAAAAAGAATAGCTGAGTTACGGATGGCTTCTAAGGTTACTGAACAGTCTCAATTGGTTGTTGCTTCAAATGCTGATGCAGAAGTTACAGAGGGGGCTGTCCCTGGTGAAACTATAACTCCATCGAATGTGCAACTTACACCATTTACAGATAATGCTTCTACTCTAGCTTCTCTTCGCATGCTTCGTGTATATTTGAGAACATATGCACTTGACCAAATGGTGCAAGCATCAAACTCATCTGCTGGAGTTCGGACTATCAAACGAGTTGAGCAAACATTGCAAGATCTTGGGGTCAATTTGAAGCCAAGGGTTCCTACAAAAGCTGTTTGTGCAGAGCATCTTGAACTAAGAAAAGAAATACTAACATGGCTGAATCTCCAGAAACAGGTGCAATATAAAGAGGCTGAAGGTTCATCTTTCCGTGATGGGTCCTACAGTGAACCACCAGGCACACCAAAGGATCGAACATTTACTCTCGACTCGATCAATTTTGGAGTTTCAAGCGAAAGGGTTGTGAAAAAGGACCAAAAACGCAAGGCGCATGGAACTCCACCTACTGCGGCTCATAAAAGACCTAGAAAACAAAAGGCCTCAGATTTTTAA 1293 0.423 MDAKDILGLHKNSFPSSLEKKSRPPKESHRKPDGISREVYALTGGMPPLMPSIHSSQLKKKPPPPEKVTWQWLPFTNSARKDDLHLYHWVRVVNGVLPTGDYSFAKYNKSVDIIKYTDEEYEKYLTDPMWTKEETNELFDLCERFDLRFVVIADRFPSSRTVEELKDRYYSVLRAILLARAASSGDVATHPVIKDPYNVSQEMERKRALSMVLSQTRQQEKRDEEVLIEAKRIAELRMASKVTEQSQLVVASNADAEVTEGAVPGETITPSNVQLTPFTDNASTLASLRMLRVYLRTYALDQMVQASNSSAGVRTIKRVEQTLQDLGVNLKPRVPTKAVCAEHLELRKEILTWLNLQKQVQYKEAEGSSFRDGSYSEPPGTPKDRTFTLDSINFGVSSERVVKKDQKRKAHGTPPTAAHKRPRKQKASDF* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2976 430 MobiDBLite consensus disorder prediction 1 40 - -
Tpr5g2976 430 Gene3D - 99 186 - -
Tpr5g2976 430 Pfam SANT/Myb-like domain of DAMP1 102 176 IPR032563 -
Tpr5g2976 430 SUPERFAMILY Homeodomain-like 126 177 IPR009057 -
Tpr5g2976 430 PANTHER BNAA04G26950D PROTEIN 2 429 - -
Tpr5g2976 430 MobiDBLite consensus disorder prediction 367 430 - -
Tpr5g2976 430 SMART sant 126 175 IPR001005 -
Tpr5g2976 430 PANTHER DNA METHYLTRANSFERASE 1-ASSOCIATED PROTEIN 1 FAMILY MEMBER 2 429 IPR027109 GO:0006281|GO:0006338|GO:0035267|GO:0043967|GO:0043968
Tpr5g2976 430 MobiDBLite consensus disorder prediction 16 36 - -
Tpr5g2976 430 CDD SANT_DMAP1_like 130 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2976 Tpr-Chr5 52770678 52776785 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tpr5g2976 SANT_DAMP1_like 4.6e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2976 K11324 - gmx:100818926 696.427