Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2975 ATGGAAGCTCCTCTCATCAACGATTCCACTTTCTCTTCAACCAACCCTTCTTTGTCAGAAATTTGGCCTCATTTCCCTCCACAAAACAACAACAACAACAAGAAAAGAAAACTAGGACTCATAGCAGGTTCCTCTCAAGAAAACAACCAACCCGAACCAGACACAACTTCAGCAGTAGTAGAACCTGGTAATGGTGGTAGCAGTAACAACAATTCAGCAGAGGAACCTTCTTCTGAGCCACATCCTAAGCAAGACTATATTCATGTCAGAGCCAGAAGAGGCCAAGCCACTGATAGCCACAGTCTTGCTGAAAGAGCAAGAAGAGAAAAGATTAGTGAGAGGATGAAAATTCTACAAGATTTAGTTCCAGGATGTAACAAGGTAATTGGTAAAGCACTTGTGTTGGATGAGATAATCAATTATATTCAATCACTGCAAAGCCAAGTTGAGTTCCTTTCAATGAGGCTTGAATCAGTTAATTCGAGATTGAATATGAACCCCTATATTGAGTGTTTCCCTTCAAAAGATGTTGGTGCTCAACCATTTGACCTTTCTGGCATAATATTCGGACCACAAGCAAACCGGGGATATTCTCAGGGATCACAACCAGGGTGGCTACATATGCAGATAACTGGTGGTTTCAATAAAGCATTGTAA 657 0.411 MEAPLINDSTFSSTNPSLSEIWPHFPPQNNNNNKKRKLGLIAGSSQENNQPEPDTTSAVVEPGNGGSSNNNSAEEPSSEPHPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQSQVEFLSMRLESVNSRLNMNPYIECFPSKDVGAQPFDLSGIIFGPQANRGYSQGSQPGWLHMQITGGFNKAL* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2975 218 CDD bHLH_AtBPE_like 85 168 - -
Tpr5g2975 218 Gene3D - 92 168 IPR036638 GO:0046983
Tpr5g2975 218 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 93 165 IPR036638 GO:0046983
Tpr5g2975 218 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 95 145 IPR011598 GO:0046983
Tpr5g2975 218 Coils Coil 142 162 - -
Tpr5g2975 218 SMART finulus 101 151 IPR011598 GO:0046983
Tpr5g2975 218 Pfam Helix-loop-helix DNA-binding domain 99 146 IPR011598 GO:0046983
Tpr5g2975 218 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 67 216 IPR024097 GO:0006355
Tpr5g2975 218 PANTHER BNAC05G07950D PROTEIN 67 216 - -
Tpr5g2975 218 Coils Coil 215 218 - -
Tpr5g2975 218 MobiDBLite consensus disorder prediction 1 82 - -
Tpr5g2975 218 MobiDBLite consensus disorder prediction 1 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2975 Tpr-Chr5 52760916 52763199 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2975 33 217 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 55.914 1.15e-62 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr5g2975 HLH 1.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2975 - - gmx:100799646 279.641