Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2971 ATGACTTCTCCTTCCACCGCTGCCGTCTCCGGCGAATTCATGCTCTTCGGAGTTAGAGTCGTCGTTGATTCCATGAGAAAGAGTGTCAGTATGAACAATCTCTCACAGTACGAACAACCTCACGACAATATCAGTATCAAGGATGATAACAATAAAGAAGTTCTCGCCGCCGGTTATGCCTCCGCCGATGACGCCGTTCCGAATAACTCCGGCAAAAACCGCGATCGCGAGCGTAAACGAGGGATTCCATGGACGGAGGAAGAGCACAAGCTGTTTTTGGTTGGATTGCAGAAAGTAGGAAAAGGTGATTGGAGAGGAATCTCTAGAAACTACGTGAAAACTCGAACGCCGACGCAGGTTGCAAGTCATGCTCAGAAGTACTTTCTCCGCCGTAGTAATCTCAATCGCCGTCGCCGTAGATCCAGCCTCTTTGATATCACAACCGACACGGTGTCTGCAATTCCAATGGAGGAAGAACAGGTGAAGAATCAAGATAGTGTTTCTCAATCACAGCCTATGTGCCCTGCAGCACCTGAACCTAGAAAAAACAATGGATTTCCTTTTATGTCAGTATTTGAGTTGGGTGTTAATGAGAGTCCAATGGAAGAACTCACTCTTGGACAAGGAAATGTGAAACACAATTTCCCAATATTCAATCCAAGTCCTTTTGTTGGTTCAGATCCTAAAGTTTCCGCTGTCTCTGACATCACTTCAAGTTCTAATTCATCAATTGACCCTCCAACACTTTCCCTTGGTCTGTCCTTCTCATCTGATCAAAGGAAGACATCATCAACACACTCAGCTTTACATGCAATGCCATGTTTCAACAATGGAGACAATATCATAAGTGTTGCTTAA 858 0.4487 MTSPSTAAVSGEFMLFGVRVVVDSMRKSVSMNNLSQYEQPHDNISIKDDNNKEVLAAGYASADDAVPNNSGKNRDRERKRGIPWTEEEHKLFLVGLQKVGKGDWRGISRNYVKTRTPTQVASHAQKYFLRRSNLNRRRRRSSLFDITTDTVSAIPMEEEQVKNQDSVSQSQPMCPAAPEPRKNNGFPFMSVFELGVNESPMEELTLGQGNVKHNFPIFNPSPFVGSDPKVSAVSDITSSSNSSIDPPTLSLGLSFSSDQRKTSSTHSALHAMPCFNNGDNIISVA* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2971 285 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 11 285 - -
Tpr5g2971 285 ProSiteProfiles SANT domain profile. 84 132 IPR017884 -
Tpr5g2971 285 Gene3D - 82 134 - -
Tpr5g2971 285 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 79 130 IPR006447 GO:0003677
Tpr5g2971 285 SMART sant 80 130 IPR001005 -
Tpr5g2971 285 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 76 132 IPR017930 -
Tpr5g2971 285 CDD SANT 83 128 IPR001005 -
Tpr5g2971 285 PANTHER KIN2 11 285 - -
Tpr5g2971 285 MobiDBLite consensus disorder prediction 58 81 - -
Tpr5g2971 285 SUPERFAMILY Homeodomain-like 78 133 IPR009057 -
Tpr5g2971 285 Pfam Myb-like DNA-binding domain 83 128 IPR001005 -
Tpr5g2971 285 ProSiteProfiles Myb-like domain profile. 76 128 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2971 Tpr-Chr5 52721275 52723771 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tpr5g2971 Myb_DNA-binding 1.4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2971 - - gmx:778059 363.999
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2971 5 52721275 52723771 Tpr5g2971 5 52721275 52723771 PCT