Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2966 ATGGCTGCCGCCGGCGAGATTTTCCGGTCGAATTTGACTGAATTGTTGGAGGAATCACATTCAGGTGATAATGAATTACACGTGCTTGCTGTTGATGATAGTCTTGTTGATCGTAAAGTCATTGAACGTTTGTTGAAGATTTCTTCATGCAAAGTTACGGTTGTGGAGAGTGCAAGAAGAGCTCTTCAGTTTTTGGGATTGGATGGAGATGGAGAGAATAGTGATATTGGATTTGATGGTGTGAAGGTTAATTTGATAATGACCGATTATTCGATGCCTGGGATGACAGGATATGAACTATTGAAGAAAATCAAGCAGGAGTCTTCTGTTTTTAGGGAGATTCCAGTGGTGATCATGTCGTCGGAGAATGTTTTGACTCGAATTGATAGGTGCCTCGAGGAAGGAGCTGAGGATTTTCTATTGAAGCCAGTCAAGTTGTCAGATGTAAGGCGCTTGAAAGAATTTATCATGAGAGGCGAAGTGAAGGATGGTGAGAAAAATTCTCTCAAACGAAGGCGATCATCAGATGATTGCAGTCCATCTCTATCAACGACATTCTCACCAATGCGTCATTTGTGCGATCCACCATCATCATTGTTCTCACCACTCTCACCATCTACATTATCCTCTAAGAAATCTAGACTGTGA 648 0.4182 MAAAGEIFRSNLTELLEESHSGDNELHVLAVDDSLVDRKVIERLLKISSCKVTVVESARRALQFLGLDGDGENSDIGFDGVKVNLIMTDYSMPGMTGYELLKKIKQESSVFREIPVVIMSSENVLTRIDRCLEEGAEDFLLKPVKLSDVRRLKEFIMRGEVKDGEKNSLKRRRSSDDCSPSLSTTFSPMRHLCDPPSSLFSPLSPSTLSSKKSRL* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2966 215 Gene3D - 26 188 - -
Tpr5g2966 215 SMART REC_2 26 153 IPR001789 GO:0000160
Tpr5g2966 215 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR3-LIKE PROTEIN 8 215 - -
Tpr5g2966 215 SUPERFAMILY CheY-like 25 156 IPR011006 -
Tpr5g2966 215 Pfam Response regulator receiver domain 28 150 IPR001789 GO:0000160
Tpr5g2966 215 ProSiteProfiles Response regulatory domain profile. 27 157 IPR001789 GO:0000160
Tpr5g2966 215 CDD REC_typeA_ARR 28 152 - -
Tpr5g2966 215 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 215 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2966 Tpr-Chr5 52644522 52646803 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2966 26 182 Response Regulator Gene Family AT3G48100 70.701 1.16e-73 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tpr5g2966 Response_reg 4.2e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2966 K14492 - gmx:100527518 288.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2966 5 52644522 52646803 Tpr2g6047 2 73520841 73523634 ECH
Tpr5g2966 5 52644522 52646803 Tpr5g2966 5 52644522 52646803 ECH