Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2964 ATGGCTTCTTCCTCAGATCCTCCTCCTTCTTCCAGACACCATACTTACGACCGTAAACAAAAATCTCTCGGCCTCTTATGCACCAATTTCTTGAGCTTGTACAATCGAGACGACGTTCGTGTTGTCGGTCTCGACGATGCCGCTGGTCGATTAGGTGTTGAGAGAAGACGGATCTATGATATTGTCAATGTTTTGGAGAGCATCGGGGTTCTTCAAAGAAAGGCTAAGAATCAGTATACATGGAAAGGGTTTGGGGCAATTCCTGTTGCTTTACAGGAGCTCAAGGAAGAGGGGTTATGGCAGAATTCACAAGAAGGTGGGAATGAAGATACAAAGGTATCTGATGAAGAGGATGAAGATGAATCATTGTCACAACCCACTGGAAGTCAGGGTGAATCATTATCCCAACCTACTGGAAGTCAGAATGACATTTTGAACCCTAATTCTGCTTTTCCCAGATCTCTCAAAAATGATAGAAGGGAAAAATCTCTGGCGCTGCTTACTCAGAATTTTGTCAAGCTCTTTGTCTGCTCTAATCTGGAAATGATATCCCTTGATGATGCTGCAAGGTTGTTGCTTGGAGATGCATATAATTCATCAACAATGAGAACAAAAGTTAGGCGCCTTTATGATATTGCAAATGTGCTAACCTCCATGAACCTTATCGAGAAGACCCATACCACAGATACAAGAAAACCAGCATTCAGGTGGCTAGGCTTAAAAGGGAAGACATGGAATGAGGCCTCACTTTCTCGGAAAAGGGCATTTGGAAATGATGTCACAAACATTAGCTTTGGGCGAAACAGAACGGATTCGTTCATGGGCGGGGACTTCAGCCAGAACCTTAAGAAGCAAAAGACAATGGAAAATGACAGTGGGCTATGTCAGGATGACAAGAACAATATGAAACAAAAACAGAGCTATCAGTTTGGTCCTTTTGCTCCAGCCTATGTATCCAAAGCCGGAACCTCAGAGAACAAAGTGAAGCAGGTGCATGACTGGGAGAGTCTCGCAACTGAACATTGCCCTCAGTATCAAAACCAAGCTTTGAAAGAACTATACTCTCATTACATGGAAGCATGGAAATCTTGGTACTCTGAAGTTGCTGGCAAGAGATCTACTCAAGTTTTGTAA 1134 0.4312 MASSSDPPPSSRHHTYDRKQKSLGLLCTNFLSLYNRDDVRVVGLDDAAGRLGVERRRIYDIVNVLESIGVLQRKAKNQYTWKGFGAIPVALQELKEEGLWQNSQEGGNEDTKVSDEEDEDESLSQPTGSQGESLSQPTGSQNDILNPNSAFPRSLKNDRREKSLALLTQNFVKLFVCSNLEMISLDDAARLLLGDAYNSSTMRTKVRRLYDIANVLTSMNLIEKTHTTDTRKPAFRWLGLKGKTWNEASLSRKRAFGNDVTNISFGRNRTDSFMGGDFSQNLKKQKTMENDSGLCQDDKNNMKQKQSYQFGPFAPAYVSKAGTSENKVKQVHDWESLATEHCPQYQNQALKELYSHYMEAWKSWYSEVAGKRSTQVL* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2964 377 SUPERFAMILY "Winged helix" DNA-binding domain 161 240 IPR036390 -
Tpr5g2964 377 PANTHER TRANSCRIPTION FACTOR E2F 10 368 IPR015633 GO:0000978|GO:0006357
Tpr5g2964 377 SMART E2F_TDP_2 18 83 IPR003316 GO:0005667|GO:0006355
Tpr5g2964 377 SMART E2F_TDP_2 159 239 IPR003316 GO:0005667|GO:0006355
Tpr5g2964 377 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 10 368 - -
Tpr5g2964 377 Pfam E2F/DP family winged-helix DNA-binding domain 19 83 IPR003316 GO:0005667|GO:0006355
Tpr5g2964 377 Pfam E2F/DP family winged-helix DNA-binding domain 161 239 IPR003316 GO:0005667|GO:0006355
Tpr5g2964 377 SUPERFAMILY "Winged helix" DNA-binding domain 17 81 IPR036390 -
Tpr5g2964 377 Gene3D - 154 241 IPR036388 -
Tpr5g2964 377 Gene3D - 13 86 IPR036388 -
Tpr5g2964 377 MobiDBLite consensus disorder prediction 99 148 - -
Tpr5g2964 377 MobiDBLite consensus disorder prediction 124 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2964 Tpr-Chr5 52606802 52610499 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2964 13 368 E2F-DP Transcription Factor Family AT3G48160 56.216 4.84e-124 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Tpr5g2964 E2F_TDP 9.8e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2964 K09391 - gmx:100795252 493.426
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2964 5 52606802 52610499 Tpr5g2964 5 52606802 52610499 ECH
Tpr5g2964 5 52606802 52610499 Tpr5g2964 5 52606802 52610499 PCT