Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2956 ATGGCATCATTTGGAGGAACTACACAGAAGTGTAATACATGTGAAAAGAAAGTCTACTGGATGGAACAACTTACTGCTGACAACAAACTGTACCACAAGTCTTGCTTCAAATGCCACCATTGCAAGGGCACCCTTAAGCTGAGTAACTATTGTTCCTTTGAGGGTGTCCTATACTGCAAGCCTCATTTTGATCAACTCTTTAAGATGACTGGTAGTTTGGACAAAAGTTTTGAAGGCATTGCAAGAATTTATGGAGTTGAAAGATCTACTACTCAGGTCCAAGCCAATAACAAAGTTTCAAGATTTTTTGCTGGAACTCAAGAAAAATGTGTTGGTTGCAACAAAACAGTGTACCCAATTGAAAAGGTATCTGTTGATGGAGAATCTTACCATAAGAGTTGCTTCAGGTGCACACATGGAGGTTGTGTAATTAGTCCATCAAATTATGTAGCTCATGAACATCGTATTTATTGTAGACACCATCAGACTCAACTCTTCAAGCAAAAGGGAAATTTCAGCCAATTTGACAAGATTGAACATGTTTAA 546 0.381 MASFGGTTQKCNTCEKKVYWMEQLTADNKLYHKSCFKCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTGSLDKSFEGIARIYGVERSTTQVQANNKVSRFFAGTQEKCVGCNKTVYPIEKVSVDGESYHKSCFRCTHGGCVISPSNYVAHEHRIYCRHHQTQLFKQKGNFSQFDKIEHV* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2956 181 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 102 135 - -
Tpr5g2956 181 SMART lim_4 109 161 IPR001781 -
Tpr5g2956 181 SMART lim_4 10 62 IPR001781 -
Tpr5g2956 181 PANTHER OS06G0237300 PROTEIN 1 181 IPR045268 GO:0051015
Tpr5g2956 181 ProSiteProfiles LIM domain profile. 108 168 IPR001781 -
Tpr5g2956 181 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 77 - -
Tpr5g2956 181 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 175 - -
Tpr5g2956 181 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 181 - -
Tpr5g2956 181 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
Tpr5g2956 181 Gene3D Cysteine Rich Protein 104 174 - -
Tpr5g2956 181 Gene3D Cysteine Rich Protein 6 75 - -
Tpr5g2956 181 ProSiteProfiles LIM domain profile. 9 69 IPR001781 -
Tpr5g2956 181 Pfam LIM domain 110 164 IPR001781 -
Tpr5g2956 181 Pfam LIM domain 11 65 IPR001781 -
Tpr5g2956 181 CDD LIM2_SF3 110 170 - -
Tpr5g2956 181 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2956 Tpr-Chr5 52530507 52534412 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Tpr5g2956 LIM 1.2e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2956 K09377 - gmx:100792627 347.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2956 5 52530507 52534412 Tpr5g2956 5 52530507 52534412 ECH
Tpr5g2956 5 52530507 52534412 Tpr5g2956 5 52530507 52534412 PCT