Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2948 ATGGCAGCATCGCCGTCTCCTCAACCACCTCTCTATGCGTCGTTGCAAACTTTTAATGACTGCAATAGTAGTAACAACAAAGAAACAACAACTTCTTCATCTATAAGCAAAATCAGTCCACTTATTTTGTTGGTTATAATAGTACTAGCAATTATCTTCTTTCTCTATGGACTTATCCAATTAGTCCTATGGTTTCTGATGAAAAGGCCATCTTCTTCATCACATTATAATTCCAACAGATTCCAAGAATCCACCCGAACCCGCGCTTTTCAGAGACAACTACAACACCTATTTCATTTACATGATTCAGGTCTAGATCAAGCTGTCATAAACACTCTTCCTATTTTCAGCTACAAAGATTTATTGGGTTTGAAGGAACCTTTTGACTGCGCTGTATGTCTCTGTGAGTTTTCTGATCAGGAGAAGCTGAGATTAGTTCCAATGTGTAGCCATGCTTTTCACATGAATTGTCTTGACACATGGCTTCTGTCAAATTCTACATGTCCTCTTTGTAGAGCAAATATCTCTAGCTGTAGTTTCCCTTTGGAGAATGTGAGTGTTGATGATTCTTTGGTTAGTGAAAGAGAAATAATCGTAGAAGAAGATAAAGTTGGGAAAAGAGTGTTTTCTGTTAGACTTGGAAAATTCAGAAATAATGAATTGGAGGATGGTAGTAGTAGTTGTAGTTTGGATGAGAGGAGATGTTATTCGATGAGTTCGTATCAGTATGTGTTTTGCGATTCAAATTTGCAAGTGGTTTTGTCTCAATCTTGTGATGATGAAAATGGGAATGTAGAGGGAAAGAGGATAGGGAACACAGCCAAAGTTGAGAGTTTTTCTGTTTCTAAGATATGGCTTTGGTCTAAGAAGAACAAATTTACTAGTTCTAATGCTGATTTTCCTTGA 906 0.372 MAASPSPQPPLYASLQTFNDCNSSNNKETTTSSSISKISPLILLVIIVLAIIFFLYGLIQLVLWFLMKRPSSSSHYNSNRFQESTRTRAFQRQLQHLFHLHDSGLDQAVINTLPIFSYKDLLGLKEPFDCAVCLCEFSDQEKLRLVPMCSHAFHMNCLDTWLLSNSTCPLCRANISSCSFPLENVSVDDSLVSEREIIVEEDKVGKRVFSVRLGKFRNNELEDGSSSCSLDERRCYSMSSYQYVFCDSNLQVVLSQSCDDENGNVEGKRIGNTAKVESFSVSKIWLWSKKNKFTSSNADFP* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2948 301 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 3 301 - -
Tpr5g2948 301 Pfam Ring finger domain 129 172 IPR001841 -
Tpr5g2948 301 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 179 IPR013083 -
Tpr5g2948 301 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 3 301 - -
Tpr5g2948 301 SMART ring_2 130 171 IPR001841 -
Tpr5g2948 301 SUPERFAMILY RING/U-box 109 177 - -
Tpr5g2948 301 ProSiteProfiles Zinc finger RING-type profile. 130 172 IPR001841 -
Tpr5g2948 301 CDD RING-H2_PA-TM-RING 129 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2948 Tpr-Chr5 52470229 52471205 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2948 29 298 C3H Transcription Factor Family AT2G18650 39.583 2.42e-50 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2948 - - cam:101488909 394.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2948 5 52470229 52471205 Tpr5g2948 5 52470229 52471205 ECH