Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2941 ATGGATTCGTCAAATAACAGTGATTCTGGAATTGATCAATTGGAAGCAGAATATGGAAGATTTCTGGATGACTATGCAAAAAACTATGATAATTACGATAGTCAAGCTACAAATGAAACTGATGAGGACATATCACATATTGATAACAACATATCACAGTGTACTGATAATGTGTTCGGTCAATCATTGGGTAGATTGTCAATTACCGGTCAATTCACTAAAATATATATTTTTGAATTGACTCTTGGTGAATTAAACAAGGCTAAAAAAACTGGATTTACATTACCTTCTGAATTTAGCAATTATGTAAGGCAATACAATTTTCATAAGTTGGTTCTGGAAGTACCAAACAAGAGCAGTTCAATTGTTCACTTACAAATTCCGGAAAATCATTCAGAGAATGTCAAGATTGCCAGAGGATGGAAAAATTTCTGCTTCGACAACAATATTAAATTAGGAGATAGATTAAGTTTTGAATTCAAAGATATCACCTTAAATGTTTGTCAGCTTTCCGTAGTTTAG 522 0.3218 MDSSNNSDSGIDQLEAEYGRFLDDYAKNYDNYDSQATNETDEDISHIDNNISQCTDNVFGQSLGRLSITGQFTKIYIFELTLGELNKAKKTGFTLPSEFSNYVRQYNFHKLVLEVPNKSSSIVHLQIPENHSENVKIARGWKNFCFDNNIKLGDRLSFEFKDITLNVCQLSVV* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2941 173 ProSiteProfiles B3 DNA-binding domain profile. 78 173 IPR003340 GO:0003677
Tpr5g2941 173 Gene3D - 71 172 IPR015300 -
Tpr5g2941 173 CDD B3_DNA 77 162 IPR003340 GO:0003677
Tpr5g2941 173 SUPERFAMILY DNA-binding pseudobarrel domain 74 163 IPR015300 -
Tpr5g2941 173 Pfam B3 DNA binding domain 87 161 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2941 Tpr-Chr5 52419886 52420953 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tpr5g2941 B3 2.1e-07 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2941 - K23038 mtr:MTR_8g103940 43.8986