Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2936 ATGAGTACTCATGTTACTAATCAAAGGGATCGCCGTATCCTATCATTCCCAGCAGTTCATCCTTGTGAATCCATATCTTCATCAACACTAATCACTTCACTAATCACACTTTCACAAACCATATCAAATTTCCAACCTCAATTATTCACAACCCAAAAACGTAACGCAAGAGAATTAACACGTCAAATCTCCATCATTTCAATCTTCCTCAAAGAAATTAAAGATACTGAATCCATTATCCCTAACTCAATAATCCTCTGTTTTTCAGAACTTCACTTCACTTTACAAAAGATTCTCTTCTTAATGCAAGATTGTATTCTAGAAGGTTCCAAGCTCTTATTGCTTGCGAAATCGCAACACGTGGCATCTTTGTTTCGTTCTCTTATTCGTGCAGTGTCTACTACACTAGATGTTTTACCTTTACATAAGGTGGAAATTTGCTTCGAAGTTAAGGAGTTTGTTGAATTAGTAGCTAAACAAGCGAGAAAAGCTAAATTTGAAGTTGAACCCAGCGATGAATTTGCTACCAAGAAACTTCATTTAGTTTTGCAACAATTCGAGAGAGGAATTGAACCAAACATGAATACAATGAATGAGATTATTGATTACTTGAAAATAAAAAGCTGGAATGATTGTGATAGAGAAATCAAATTCTTAGAAGATGAGATAAGTTTGTTAGAGAATCGCGATTGTAACGAACGAGAAGTTCCATTGTTGAGTAGCTTAGTTGGGTTTTTAAGCTACTGCAGAGTAGTTATATTTGAATCTCTTGATGGAAATTCTTTTGATGAACTCGAACTCGAAGCTCGACGAAGCACTGAGATAATAACTCTAACTACTTGTCTAAATCCAGAGGATTTTCGATGTCCAATTTCGCTAGAATTAATGACTGAACCAGTAACAGTTTCAACAGGACAAACCTATGATCGTGCTTCAATTCAGAAATGGCTTAAATCAGGAAACACTACATGTCCCAAAACAGGAGAGAATCTTAAGAACACAGAGTTAGTTCCAAACACAACACTGAAGAAACTTATCCAACAATTCTGCTTCGACAATGGTATATCTTACACCAGATTTTCTAATTCGAACCGTAGCCGCGACATAACTAGGACTATTTTACCAGGTAGTTCTGCAGCAGCTCATGCTATGCAGTTTCTTTCATGGTTTCTAACACGACGGCTTGTGTTTGGAACTGAGAAACAGAAGAACAAAGCAGCTTATGAGATTCGTTTGTTAACAAGGTCAAGTATTTTTAATAGAGCATGTTTGATTGAAGTTGGAACTGTTCCACCATTGTTGGAACTTTTAGCTACGGAAGATAAAACGACACAAGAGAATGCTATCTCTGCATTGATGAAGCTTTCAAAGCATGCAACTGGGCCTGAAAATATAATGGCACATAACGGTTTAAAGCGTGTTGTTTATGTACTGAGAAACGGGCTTAGTCTTGAAGCTCGTCAAATTGCAGCTGCTATAGTATTCTATCTTTGTTCTGTAAAAGAATATAGAAAAATCATAGGTGAAAATCAAGAAGTGATTCATGGTTTAGTGAAATTGGTTAAAGAAGGAACAACCTGTGGGAAAAAGAATGCAGTTGTTGCGATTTTTGGACTTCTTTTATTTCCTAGGAATCATCAACGCGTGCTTGAATCCGGTGTTGTTCACGCCCTTGTTTCTATTTTGGCTTCTTCGGATAAGGAAGAACTTGTTACTGAATCTTTGGCTGTTCTTGCTGCACTTGCTGAGAATTTTGATGGTGCCAATGCTGTTTTTGAAGCTTCTGCATTGTCTTTGATTATTGGGATGTTGAGGTCTGCTACTTCGCGTGTTGGGAAGGAGCATTGTGCTTCGATTTTGTTGTCTCTGTGTGTTAATGTTGGTGTGGATGTTGTAAGTGTTCTTGCTAAGGATGTTACGCTTATGCCTATGCTTTATTCGCTTCTTACTGATGGTAATTCTCATGCTGCTAAAAAAGCGCGTTTGCTTATTACAGTTCTTCAAGATTTCAATGAAACAGCTAGTTCTCGATTGAAAGGTTCTTCAATTCTGCGCGAAATGAATAGGTTAGAAATTAGAAATTAG 2085 0.3712 MSTHVTNQRDRRILSFPAVHPCESISSSTLITSLITLSQTISNFQPQLFTTQKRNARELTRQISIISIFLKEIKDTESIIPNSIILCFSELHFTLQKILFLMQDCILEGSKLLLLAKSQHVASLFRSLIRAVSTTLDVLPLHKVEICFEVKEFVELVAKQARKAKFEVEPSDEFATKKLHLVLQQFERGIEPNMNTMNEIIDYLKIKSWNDCDREIKFLEDEISLLENRDCNEREVPLLSSLVGFLSYCRVVIFESLDGNSFDELELEARRSTEIITLTTCLNPEDFRCPISLELMTEPVTVSTGQTYDRASIQKWLKSGNTTCPKTGENLKNTELVPNTTLKKLIQQFCFDNGISYTRFSNSNRSRDITRTILPGSSAAAHAMQFLSWFLTRRLVFGTEKQKNKAAYEIRLLTRSSIFNRACLIEVGTVPPLLELLATEDKTTQENAISALMKLSKHATGPENIMAHNGLKRVVYVLRNGLSLEARQIAAAIVFYLCSVKEYRKIIGENQEVIHGLVKLVKEGTTCGKKNAVVAIFGLLLFPRNHQRVLESGVVHALVSILASSDKEELVTESLAVLAALAENFDGANAVFEASALSLIIGMLRSATSRVGKEHCASILLSLCVNVGVDVVSVLAKDVTLMPMLYSLLTDGNSHAAKKARLLITVLQDFNETASSRLKGSSILREMNRLEIRN* 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2936 694 PANTHER OS07G0532750 PROTEIN 7 677 - -
Tpr5g2936 694 SUPERFAMILY ARM repeat 399 668 IPR016024 -
Tpr5g2936 694 ProSiteProfiles U-box domain profile. 282 356 IPR003613 GO:0004842|GO:0016567
Tpr5g2936 694 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 553 596 IPR000225 GO:0005515
Tpr5g2936 694 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 428 470 IPR000225 GO:0005515
Tpr5g2936 694 Pfam Armadillo/beta-catenin-like repeat 420 452 IPR000225 GO:0005515
Tpr5g2936 694 PANTHER U BOX DOMAIN-CONTAINING 7 677 - -
Tpr5g2936 694 CDD RING-Ubox_PUB 287 329 IPR045210 -
Tpr5g2936 694 Gene3D - 370 686 IPR011989 -
Tpr5g2936 694 SUPERFAMILY RING/U-box 284 357 - -
Tpr5g2936 694 SMART arm_5 542 583 IPR000225 GO:0005515
Tpr5g2936 694 SMART arm_5 416 457 IPR000225 GO:0005515
Tpr5g2936 694 Coils Coil 209 229 - -
Tpr5g2936 694 SMART Ubox_2 286 349 IPR003613 GO:0004842|GO:0016567
Tpr5g2936 694 Pfam U-box domain 284 351 IPR003613 GO:0004842|GO:0016567
Tpr5g2936 694 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 283 357 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2936 Tpr-Chr5 52385780 52388231 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2936 4 672 U-box Gene Family AT1G60190 38.971 4.72e-161 478
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2936 - - mtr:MTR_4g107010 1092.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2936 5 52385780 52388231 Tpr2g6016 2 72849596 72851857 ECH
Tpr5g2936 5 52385780 52388231 Tpr5g2936 5 52385780 52388231 ECH