Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2919 ATGTTTCCTTCGATTCCTGTTACACTTAACTCTCTAATGGTTCTTGAGACGAATCTTAGAGAAAACTATGCCTCACAATCACAACCAATACATTTGCAAGAAAACTACTTAAAGCCAAGGATGAAAGATGAGTTAATACCTTTTGGTGCTCATTCCACGCAGGGTAGTTTCTTGCAAGATTTTCACCATATCGATCAATTTCATGTGCATGGCTCCTCATCCTCCAATCAAGTTTTTGGGGTCCAAACACAAAATTTTGATCCTTTTGGTAATGCAGAATGTGCAAATACAGATTTTGAAGTTTATGATGGAAAGCCTTTTGGCGAGAATAATATTAATGGTAGTGAGCATGCTCAACTTATTGAAAATTTTCAATATGATGGTTATAGTTTGAATATCCCTAGAAGGAATCATCTTGATCTTATGGTTGAAAACCATAGTTATTTTCCCTTTAATAATCCTTCAGAAACCAAGCCATTGAATTATGTTGTACCAGATGATGAAGTTTCAAGCATAGCACCAACAAATTATTACCAAAGAGCAGGGTTGAATAGAAACAACAGGTTATTATCTCCTACCACAAGAAGAGCATTTAAAGCAAGGAAGAAATCAAACATAGTGAAGGGGCAATGGACAGTGGATGAAGATAGATTGTTGATTCAAATGGTGGAACAATTTGGAATGAGGAAGTGGTCTCATATTGCTCAAAAGTTGCCTGGGAGAATAGGGAAACAGTGCAGAGAAAGATGGCATAACCATTTAAGACCTGACATTAAGAAAGACATATGGACTGATGAAGAGGATAAGATATTGATCCAAGCTCATTCAGAGATAGGAAATAAATGGGCAGAGATCGCGAAAAGATTGCCAGGAAGAACTGAGAACTCGATAAAAAACCATTGGAATGCAACAAAGAGAAGGCAATATTCGAAAAGAAAATGTCGCTCAAAGTACCCTAGAGGCACTCTTCTGCAGGACTATATCAAAAGCTTGAATTTGGACCAAAATCCACCAAGAGACTTTCGAAAAAGATCTTCGGCTAATGCAAAGAAAACAGTTACTTGTAGCACAAGCAAATCAGCAACACAACAAATTCCTCAGCCACAGATTGCAAACCAGTTTTGTCCCAATGACAGGCCGGGGCCAAACTACGAGTTTAATGATTTTTCTTTGGATGATAATTTGTTTGAAGAAGGGTGTGGTATTGATTCTCTGCTAGATGAAATGTCAAGTGTTCCTACTACGGATGAGAAAGATTTTGAAGAAAAACAACAATGTGATAAGGAAAGCATGCAAGTTAATCTTGAAGAGCAACAATTTGAGACACAAGTTGAAATTAAGAAGGAGTTGGATTTGGTGGAGATGATCTCTCAGGTTAATCAAAGTATTAATTGA 1395 0.3706 MFPSIPVTLNSLMVLETNLRENYASQSQPIHLQENYLKPRMKDELIPFGAHSTQGSFLQDFHHIDQFHVHGSSSSNQVFGVQTQNFDPFGNAECANTDFEVYDGKPFGENNINGSEHAQLIENFQYDGYSLNIPRRNHLDLMVENHSYFPFNNPSETKPLNYVVPDDEVSSIAPTNYYQRAGLNRNNRLLSPTTRRAFKARKKSNIVKGQWTVDEDRLLIQMVEQFGMRKWSHIAQKLPGRIGKQCRERWHNHLRPDIKKDIWTDEEDKILIQAHSEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQYSKRKCRSKYPRGTLLQDYIKSLNLDQNPPRDFRKRSSANAKKTVTCSTSKSATQQIPQPQIANQFCPNDRPGPNYEFNDFSLDDNLFEEGCGIDSLLDEMSSVPTTDEKDFEEKQQCDKESMQVNLEEQQFETQVEIKKELDLVEMISQVNQSIN* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2919 464 ProSiteProfiles Myb-like domain profile. 203 254 IPR001005 -
Tpr5g2919 464 MobiDBLite consensus disorder prediction 334 363 - -
Tpr5g2919 464 PANTHER MYB PROTEIN-RELATED 133 346 - -
Tpr5g2919 464 ProSiteProfiles Myb-like domain profile. 255 305 IPR001005 -
Tpr5g2919 464 Gene3D - 207 260 - -
Tpr5g2919 464 CDD SANT 211 254 IPR001005 -
Tpr5g2919 464 MobiDBLite consensus disorder prediction 348 363 - -
Tpr5g2919 464 Pfam Myb-like DNA-binding domain 263 302 IPR001005 -
Tpr5g2919 464 Pfam Myb-like DNA-binding domain 208 254 IPR001005 -
Tpr5g2919 464 SUPERFAMILY Homeodomain-like 205 301 IPR009057 -
Tpr5g2919 464 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 203 258 IPR017930 -
Tpr5g2919 464 CDD SANT 263 305 IPR001005 -
Tpr5g2919 464 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 259 309 IPR017930 -
Tpr5g2919 464 PANTHER BNAC07G50190D PROTEIN 133 346 - -
Tpr5g2919 464 Gene3D - 261 322 - -
Tpr5g2919 464 SMART sant 259 307 IPR001005 -
Tpr5g2919 464 SMART sant 207 256 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2919 Tpr-Chr5 52265373 52268039 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2919 21 409 MYB Transcription Factor Family AT4G18770 44.056 1.63e-95 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr5g2919 Myb_DNA-binding 3.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2919 K09422 - gmx:100816653 600.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2919 5 52265373 52268039 Tpr3g2768 3 28423481 28425544 ECH
Tpr5g2919 5 52265373 52268039 Tpr5g2919 5 52265373 52268039 ECH
Tpr5g2919 5 52265373 52268039 Tpr5g2919 5 52265373 52268039 PCT