Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2890 ATGGCATCATCATCATCATCCAGCTCTTATAATTCACCATGTGCTGCCTGCAAATTCTTGAGGAGAAAATGCATGCCAGGATGCATCTTTGCACCTTACTTTCCACCAGAAGAGCCTCAAAAATTTGCAAATGTTCACAAAATATTTGGTGCTAGCAATGTCACAAAGCTTCTCAACGAACTCCTCCCTCAACAAAGAGAAGATGCAGTGAACTCACTTGCTTATGAAGCAGAAGCAAGAGTGAGGGACCCAGTTTATGGCTGTGTAGGTGCTATATCTTTCCTCCAAAAACAAGTTCAGAAGCTTCAAAAGGAACTTGATGCTGCTAACACTGATCTTCTTCGCTATTCCCTTACCGATCATATCCCTGCTGCGCCAACGTCTCTTTCTATGCCTCCAGGAGTTGTATCAGTTCAACAAATGCCACAAAGATCACAGTTAAGTGCAAGAGATGAAGGAGGTGGTTTTTTTGGACAATCTCCTAATATTGCTAATTATTCTTTTCCATATTCTCTTCCTTGGACTGATACATCCTCTGAGGATATGAGTGAGGGTGGAGGAGGAGGAGGAGGAGGAAACCTTTTGTGA 588 0.4269 MASSSSSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPQQREDAVNSLAYEAEARVRDPVYGCVGAISFLQKQVQKLQKELDAANTDLLRYSLTDHIPAAPTSLSMPPGVVSVQQMPQRSQLSARDEGGGFFGQSPNIANYSFPYSLPWTDTSSEDMSEGGGGGGGGNLL* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2890 195 Coils Coil 92 119 - -
Tpr5g2890 195 PANTHER ELONGATED PETIOLULE 1 5 189 - -
Tpr5g2890 195 Pfam Lateral organ boundaries (LOB) domain 13 109 IPR004883 -
Tpr5g2890 195 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
Tpr5g2890 195 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2890 Tpr-Chr5 52043873 52046535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2890 4 176 AS2 family AT5G63090 65.909 9.94e-78 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tpr5g2890 LOB 2.4e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2890 - - gmx:100803667 279.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2890 5 52043873 52046535 Tpr5g2890 5 52043873 52046535 ECH
Tpr5g2890 5 52043873 52046535 Tpr7g2133 7 27571712 27574182 PCT