Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2888 ATGGGTCGTCATTCCTGTTGTTTAAAGCAAAAATTAAGAAAAGGTTTATGGTCCCCTGAAGAAGATGAAAAGCTTTTCAATCACATAACCAGATTTGGTGTTGGTTGTTGGAGTTCTGTTCCAAAACAAGCTGGGCTTCAAAGATGTGGTAAAAGTTGCAGATTAAGATGGATAAATTATTTGAGGCCTGATTTAAAGAGAGGAATGTTCTCACAACAAGAAGAAGATCTTATAATCAGTCTTCATGAACTCCTTGGAAATAGGTGGGCTCAAATAGCGGCACAATTACCGGGAAGAACAGATAATGAAATAAAAAACTTCTGGAATTCATGTTTAAAGAAGAAGCTTATGAAGCAAGGGATTGATCCAGCAACACACAAACCTCATACAGAAGCATATGTTAAGGAAGAGAACAAAACTACAGAAACAATAACAACAACATCTATGCAAATACCATCAATTACATCACAAGGTTCTTCGTTTCTAATAAGCGATTCGAGTTACTATGAGAATAATGGTCTAAGTCTAACAGAACCTTCAAGAGAAATTTTTAACAGCAAATCAGCATTGGATTTGGACCCTTTGTTCTGCTATGATTTCCAATCAGGTTATAATTTACCTATAAATAATTATCAGAGCCAAAGCCAATTTGGACTCAATTCAAGCTATGGATTCACTTCAATGCCGAGTCTAACAAATTCCGATCACGCAAATGTGTCGATAACAGAGTTTTCAGACAACAATTCAGCATCAAAAATCAGCTCATTGTTCATGAATGATCAAGTGAAAGAAAGCAATTCAAGCAATAGCTCAAACATGAGTACTATTTATCCATCTCAGATGACAACTACTATGATGGAAAATAACAATGCAGGGTTTTCTTGGGAAGGATCAGAGAACAAATTGGACCCTTTGTTTCAATTTCAAGTGAATGCTATAAAATCTGAAGAATTTGGAACAAGTTCATGGGAAGAAGGACATATTCAAACTCAAAATTCAATAGATTTCAGTAGCTATCATCCTTTAACATCACTTTCAGAAGATTTAACAGAAGCAAATTTTGATGCATTCCACCATATATGA 1083 0.35 MGRHSCCLKQKLRKGLWSPEEDEKLFNHITRFGVGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLIISLHELLGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKLMKQGIDPATHKPHTEAYVKEENKTTETITTTSMQIPSITSQGSSFLISDSSYYENNGLSLTEPSREIFNSKSALDLDPLFCYDFQSGYNLPINNYQSQSQFGLNSSYGFTSMPSLTNSDHANVSITEFSDNNSASKISSLFMNDQVKESNSSNSSNMSTIYPSQMTTTMMENNNAGFSWEGSENKLDPLFQFQVNAIKSEEFGTSSWEEGHIQTQNSIDFSSYHPLTSLSEDLTEANFDAFHHI* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2888 360 CDD SANT 70 109 IPR001005 -
Tpr5g2888 360 CDD SANT 17 61 IPR001005 -
Tpr5g2888 360 Gene3D - 11 67 - -
Tpr5g2888 360 PANTHER MYB DOMAIN PROTEIN 55 1 356 - -
Tpr5g2888 360 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Tpr5g2888 360 PANTHER MYB TRANSCRIPTION FACTOR 1 356 - -
Tpr5g2888 360 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Tpr5g2888 360 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tpr5g2888 360 Gene3D - 68 144 - -
Tpr5g2888 360 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tpr5g2888 360 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Tpr5g2888 360 SMART sant 13 63 IPR001005 -
Tpr5g2888 360 SMART sant 66 114 IPR001005 -
Tpr5g2888 360 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tpr5g2888 360 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2888 Tpr-Chr5 52021407 52023270 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2888 1 140 MYB Transcription Factor Family AT4G01680 80.000 1.35e-81 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr5g2888 Myb_DNA-binding 8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2888 K09422 - gmx:100811140 522.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2888 5 52021407 52023270 Tpr5g2888 5 52021407 52023270 ECH
Tpr5g2888 5 52021407 52023270 Tpr5g2888 5 52021407 52023270 PCT