Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2885 ATGAACCCTTACGACAATCGTTACTCCGATTCCACTTCTTTTCGCGGCCGCCGCAGTGATCTTGTTGGACCTATGCCGCCGCCTAATTTCGGCCGCGGCGGTCCTGCTCCGTACACTGCTCCTTATGCACCACACGCACCTACCGGTTTCGGATCCGCATCTGTTACTCCGGTTCCTCACTTTTTGCCTCCTCCTGGTGGAGGTGGATTTAGCATAGGTCGTGGTGGTGGTGGTGGTGGTGGTGGTTTTGGTCCTAGAATGGCCAACGGTGATAGAAAGTATGACACAGGTCGTTTTGGTGGTAGTAGTGGTGGGAGAGGTCGTGGTGGCGGTGGTGGTAGAGGTGGAAGTCAAGGTTTTAGAGGCTCTGGTAGAGGAGGTAGTGGAGGGAGAGGTGGTGGGTTTGGAGGTAAACATGGATCTTCTAAGGATGATTTGAATAACATTAATCTTCCAAAGCAAGATTTTAGGAATTTGGTACCTTTTCAGAAGAATTTCTATATTGAAAGTCCTCAGATACAAGCTATGTCTGATATTCAAGTTATGCAGTACCGAGCTAGTAGGGATATCACTGTTGAAGGGCATGATGTGCCGAAGCCAATTCTGTCTTTTCATGAGGCTAATTTTCCTGATTACTGTCTTGATGTCATTGCCAAGTTGGGTTTTGTTGAGCCCACTCCAATTCAGGCTCAGGGTTGGCCCATGGCTCTTACCGGTAGAGATTTAATTGGCATTGCCGAGACTGGCTCTGGTAAAACTTTGTCGTATCTACTTCCTGCTTTAGTTCATGTCAGTGCACAACCTCGTTTGGCACAAGGGGAAGGTCCCATTGTCTTGGTTTTAGCACCGACTAGAGAGTTAGCTGTTCAAATTCAACAAGAAGCTATGAAATTCGGGGGACGATCAAATATTAGATGTACATGCATATACGGCGGTGCTCCAAAGGGCCCTCAAATCCGTGACCTTAGAATGGGTGTTGAGATTGTTATTGCTACTCCTGGACGTCTAATAGATATGTTGGAAGCTCAGTATACAAACCTGCAGAGAGTGACATACCTTGTCTTGGATGAAGCTGATCGAATGTTGGATATGGGTTTTGAACCTCAGATTCGGAAGATTGTAAACCAGATTCGACCAGATAGGCAGACATTATACTGGAGTGCAACGTGGCCAAAGGAGGTTGAAACTCTGGCAAGACAGTTTCTGCAGAACCCATATAAGGTAGTTATTGGATCACCATATCTAAAAGCAAATCAATCTATAAATCAAGTTGTTGAAGTTGTCAGTGACATGGAGAAATATAACAGATTGATCAAGCTGCTGAAAGAAGTGATGGATGGGAGCCGAGTTCTAATATTTACTGAAACAAAAAAGGGATGTGACCAAATTACAAAACAATTGAGAATGGATGGATGGCCAGCATTATCCATCCATGGTGATAAAAACCAGGCTGAAAGGGACTGGGTTTTGGCTGAATTTAAGAGTGGCAGAAGTCCAATAATGACTGCCACTGATGTTGCTGCACGGGGTCTTGATGTGAAGGACATAAAATGCGTGGTCAATTATGATTTTCCATCAAGCCTTGAAGATTATGTCCACAGAATTGGTCGAACTGGGCGTGCAGGGGCTAAAGGAACTGCATACAGTTTCTTTACCCGTGCTAATGCCAAGTATGCTAGGGATTTGATTAAGATCCTACAAGATGCTGGTCAGATTGTTAGTCCTGCATTGTCTGAATTGACTCGGTCAGCTGGCTTTGGTCAACAGGCAGGAAGGGGAGGCTTTCGATCAAGAGGACGAGGAGGAGGCTATGGCAATCGGAGTTCAACATCAGGATCCAATGCCATTCCTGTAGGCGGGAAGAGGCCTTGGCAGTCCCGGTAG 1884 0.4597 MNPYDNRYSDSTSFRGRRSDLVGPMPPPNFGRGGPAPYTAPYAPHAPTGFGSASVTPVPHFLPPPGGGGFSIGRGGGGGGGGFGPRMANGDRKYDTGRFGGSSGGRGRGGGGGRGGSQGFRGSGRGGSGGRGGGFGGKHGSSKDDLNNINLPKQDFRNLVPFQKNFYIESPQIQAMSDIQVMQYRASRDITVEGHDVPKPILSFHEANFPDYCLDVIAKLGFVEPTPIQAQGWPMALTGRDLIGIAETGSGKTLSYLLPALVHVSAQPRLAQGEGPIVLVLAPTRELAVQIQQEAMKFGGRSNIRCTCIYGGAPKGPQIRDLRMGVEIVIATPGRLIDMLEAQYTNLQRVTYLVLDEADRMLDMGFEPQIRKIVNQIRPDRQTLYWSATWPKEVETLARQFLQNPYKVVIGSPYLKANQSINQVVEVVSDMEKYNRLIKLLKEVMDGSRVLIFTETKKGCDQITKQLRMDGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKCVVNYDFPSSLEDYVHRIGRTGRAGAKGTAYSFFTRANAKYARDLIKILQDAGQIVSPALSELTRSAGFGQQAGRGGFRSRGRGGGYGNRSSTSGSNAIPVGGKRPWQSR* 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2885 627 Gene3D - 413 584 IPR027417 -
Tpr5g2885 627 MobiDBLite consensus disorder prediction 588 627 - -
Tpr5g2885 627 SMART helicmild6 461 542 IPR001650 -
Tpr5g2885 627 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 202 230 IPR014014 GO:0003724
Tpr5g2885 627 Pfam DEAD/DEAH box helicase 226 397 IPR011545 GO:0003676|GO:0005524
Tpr5g2885 627 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 275 562 IPR027417 -
Tpr5g2885 627 MobiDBLite consensus disorder prediction 99 132 - -
Tpr5g2885 627 CDD SF2_C_DEAD 421 551 - -
Tpr5g2885 627 Pfam Helicase conserved C-terminal domain 432 542 IPR001650 -
Tpr5g2885 627 Gene3D - 165 412 IPR027417 -
Tpr5g2885 627 PANTHER LD32873P 69 604 - -
Tpr5g2885 627 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 354 362 IPR000629 -
Tpr5g2885 627 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 233 408 IPR014001 -
Tpr5g2885 627 CDD DEADc_DDX5_DDX17 214 409 - -
Tpr5g2885 627 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 69 604 - -
Tpr5g2885 627 SMART ultradead3 221 424 IPR014001 -
Tpr5g2885 627 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 436 581 IPR001650 -
Tpr5g2885 627 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2885 Tpr-Chr5 51989424 51993865 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2885 190 580 Eukaryotic Initiation Factors Gene Family AT3G19760 35.204 1.30e-69 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2885 K12823 - gmx:100817092 868.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2885 5 51989424 51993865 Tpr5g2885 5 51989424 51993865 ECH