Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2884 ATGGAAAATAAGGATGGTAACCCAAAAGAAGCAAAGGATTATTATTCTAGATCAATATGGTGGTCAGAAACAGCACAAGCATTTGAAGATCATAAAATATATGACACAAATGGAACTTATAGCTTCCAAGAAATTATGACTCCAGACATTTCTGAAAATTTTGGAGAACTCAAAAGTTTAACTAGTAACAATAGAAACAAAGTTAATGAAATAGTACCAGATGACGGTAGCGAAGAAAACGGCGAATTTGTTGTTCCTTATTCTATACAAATATTGTCAACAGAAATTGTGGAAATTGTTGAGGATGGAAAGAGTATAACAATCAACAAAGATAGAAGAGTTGATGATCTTTATGTTGCTGTTGGAGAAGATGATTTGGATGTTGTTAAATGGGCTCTTGATCATGCTGTTTCTCCTGGTTCTAGGATTTTTCTTGTCCATGTTTCTCCTCCAATAACGTTGATTCCTACACCAGTTGGGATGCTTGAAAGAAACCAACTTACCCCACAACAAGTAAGGCGTTACCTAAATGAAGTCAACAATAAGAGGAAAGATCTTTTGCAGCAGTATATCCAGTTGATTACTGAAGCAAAGGTAACTGCAGAAACGTTGATTCTAGAGAGCAAGTTCAAAGGAAAAGCCATTTTGGATCTCATCTCTATTCTTAACATAACCAACCTTGTATTAGGAATCAAGAAGCTACCCTGCAGAAGGCCCAATGATAAATTGAGTGAAGGAGTGTTCGTAAAGAAAAATGCACCAAAGACATGTGATGTTACCTTGATTTACAATGGTGAGGTGTTTATGTCTGATACATTTGTGGGTCAACAAAAGCAATCCTACTGTTTATTTTCACAAAATAAAGATCATTCAAAACGCAAATTATTTCAGTGTATCTGCTTTTCAGGATGCGTGAAAGATGACAAGGATAATTAA 936 0.3526 MENKDGNPKEAKDYYSRSIWWSETAQAFEDHKIYDTNGTYSFQEIMTPDISENFGELKSLTSNNRNKVNEIVPDDGSEENGEFVVPYSIQILSTEIVEIVEDGKSITINKDRRVDDLYVAVGEDDLDVVKWALDHAVSPGSRIFLVHVSPPITLIPTPVGMLERNQLTPQQVRRYLNEVNNKRKDLLQQYIQLITEAKVTAETLILESKFKGKAILDLISILNITNLVLGIKKLPCRRPNDKLSEGVFVKKNAPKTCDVTLIYNGEVFMSDTFVGQQKQSYCLFSQNKDHSKRKLFQCICFSGCVKDDKDN* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2884 311 CDD STK_N 118 265 - -
Tpr5g2884 311 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 123 232 - -
Tpr5g2884 311 Gene3D HUPs 118 238 IPR014729 -
Tpr5g2884 311 Coils Coil 176 196 - -
Tpr5g2884 311 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 52-LIKE 78 307 - -
Tpr5g2884 311 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 52-LIKE 78 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2884 Tpr-Chr5 51984918 51987523 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2884 105 270 U-box Gene Family AT3G61390 30.814 1.68e-13 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2884 - - pvu:PHAVU_003G204300g 385.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2884 5 51984918 51987523 Tpr5g2884 5 51984918 51987523 ECH