Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2862 ATGTCTATCACTTCCTTCAAATCTCTAACAATGGCTGAATCATGTTTACTCTCACAACCTTCACTCTTCTACACCAAAACCAAATCCTCATTCATTTCAAACACTGCTAAGTCCTTCAAGATACAAAACCCAACACACAATTCTTCAAGGTTTTCACAATCTATTTCTCTCACTGTTAGTAACAGAAGAACACGTGATTCTTCTTTGGTTACATTTGTTGCACAGACAAGTGATTGGACTCAGGAAGAGAAAGAAGATGGAGCATGGGAGAATCAAGGTGAAACTGCTTGGGATGGTGAAACTGAAACACCTGAGAGTGATGGTGATGTTGGGAGATTTGAGGAATCTCCTGAAGATTTGAAGATTTTTGTTGGGAATTTGCCTTTTGATGTTGATAGTGACAAATTGGCTGAGCTTTTTGAGCAGGCTGGAACTGTTGAAGTTGCTGAGGTAATTTATAACAGGGAGACTGACCGTAGCCGCGGGTTTGGATTTGTAACAATGAGTACAGCTGAAGAAGTTGAGAGTGCTGTCAACAAGTTCAGTGGCTATGAATTAGATGGAAGAGCGTTGACTGTTAATAAGGCTGCTCCAAGAGGAGCACCACGGCCTGAACGCCCACCACGTTCCTTTGATTCTGGTGCTCCTGGTTTAAGACTCTACGTTGGTAACTTGCCATGGGATGTTGACAATTCTAGCTTGGAGCAACTTTTCAGCGAACATGGTAAGGTTGAGAATGCCCGGGTAGTCTATGACAGAGAGACAAGTCGATCACGTGGTTTTGGCTTTGTTACAATGGCGAGTGTCGATGATGTGAGTGAAGCCATTGCTGCTCTTGACGGTCAGGAATTTAAGGGGAGGGCAATCATAGTGAATGTTGCTGTGGAAAGACCTAGGCGCTCTTACTGA 909 0.4345 MSITSFKSLTMAESCLLSQPSLFYTKTKSSFISNTAKSFKIQNPTHNSSRFSQSISLTVSNRRTRDSSLVTFVAQTSDWTQEEKEDGAWENQGETAWDGETETPESDGDVGRFEESPEDLKIFVGNLPFDVDSDKLAELFEQAGTVEVAEVIYNRETDRSRGFGFVTMSTAEEVESAVNKFSGYELDGRALTVNKAAPRGAPRPERPPRSFDSGAPGLRLYVGNLPWDVDNSSLEQLFSEHGKVENARVVYDRETSRSRGFGFVTMASVDDVSEAIAALDGQEFKGRAIIVNVAVERPRRSY* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2862 302 Gene3D - 59 202 IPR012677 -
Tpr5g2862 302 Gene3D - 203 301 IPR012677 -
Tpr5g2862 302 PANTHER RIBONUCLEOPROTEIN 2 90 - -
Tpr5g2862 302 PANTHER RIBONUCLEOPROTEIN 106 301 - -
Tpr5g2862 302 SUPERFAMILY RNA-binding domain, RBD 116 210 IPR035979 GO:0003676
Tpr5g2862 302 CDD RRM_HP0827_like 121 198 - -
Tpr5g2862 302 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 198 IPR000504 GO:0003723
Tpr5g2862 302 SMART rrm1_1 121 194 IPR000504 GO:0003723
Tpr5g2862 302 SMART rrm1_1 219 292 IPR000504 GO:0003723
Tpr5g2862 302 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 218 296 IPR000504 GO:0003723
Tpr5g2862 302 PANTHER OS02G0815200 PROTEIN 106 301 - -
Tpr5g2862 302 PANTHER OS02G0815200 PROTEIN 2 90 - -
Tpr5g2862 302 MobiDBLite consensus disorder prediction 79 111 - -
Tpr5g2862 302 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 220 289 IPR000504 GO:0003723
Tpr5g2862 302 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 191 IPR000504 GO:0003723
Tpr5g2862 302 SUPERFAMILY RNA-binding domain, RBD 216 300 IPR035979 GO:0003676
Tpr5g2862 302 CDD RRM_HP0827_like 219 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2862 Tpr-Chr5 51787287 51790144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2862 110 301 Eukaryotic Initiation Factors Gene Family AT3G16380 23.958 5.71e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2862 - - gmx:100804984 360.147
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2862 5 51787287 51790144 Tpr5g2862 5 51787287 51790144 ECH
Tpr4g1996 4 20649641 20655847 Tpr5g2862 5 51787287 51790144 PCT
Tpr5g2862 5 51787287 51790144 Tpr7g2172 7 28385132 28387429 PCT