Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2860 ATGGCTATGTCTCACTCTTTCATTCCTCTGGTCTTTTTCATATTGCTACTTATACAGGCCATAGCTGGCATTGACCTAAATTGGTATGATGCTCATGCAACCTTCTACGGTGGTCCTTCAGGAGCTGGAACCATGCAGGGGGCTTGTGGTTATGGTGATCTGTACAAACAAGGATATGGACTTGCAAACACAGCACTAAGCACAGCTCTATTCAATAATGGAGCTACTTGTGGTGCTTGTTTTCAGTTATTTTGTGTCAACGATCCCCAATGGTGCATAAAGGGCGCAAAGCCAATCACAGTAACCGCAACAAATTTTTGTCCTCCAAATTCCGCCCAGCCCGGTGCTTGTAACCCACCACTAAAACACTTTGACTTAAGTTATAAAATGTTCACTTCTATTGCCTACGAAAAAGGCGGTATCATACCCGTTAAATATCGACGTGTTTCATGTGTGAAACAAGGGGGTGTTAGGTTTGAGATCAACGGAAACCCTAATTTCTTGTTTGTTTTGGTGTTCAATGTTGCCAATGCTGGTGATGTTTCTCGTGTTAGTGTCAAAGGGTCTAAGACTGGATGGATTCCCATGAAGCGCAATTTTGGACAAAAGTGGAATACTGGAGTGAATTTGGTAGGACAAGCTTTGTCATTTCAAGTTACTACAAGTGATGGAAAAACTTTGGAGTTTTATTCAGTTTCTCCTTACAACTGGCAATTTGGACAGACTTATCAGAGCCAGGGTAATTTTTAG 750 0.4187 MAMSHSFIPLVFFILLLIQAIAGIDLNWYDAHATFYGGPSGAGTMQGACGYGDLYKQGYGLANTALSTALFNNGATCGACFQLFCVNDPQWCIKGAKPITVTATNFCPPNSAQPGACNPPLKHFDLSYKMFTSIAYEKGGIIPVKYRRVSCVKQGGVRFEINGNPNFLFVLVFNVANAGDVSRVSVKGSKTGWIPMKRNFGQKWNTGVNLVGQALSFQVTTSDGKTLEFYSVSPYNWQFGQTYQSQGNF* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2860 249 SUPERFAMILY PHL pollen allergen 153 245 IPR036749 -
Tpr5g2860 249 PANTHER EXPANSIN-A15 10 249 IPR002963 GO:0009664
Tpr5g2860 249 Pfam Expansin C-terminal domain 157 234 IPR007117 -
Tpr5g2860 249 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 156 IPR007112 -
Tpr5g2860 249 SUPERFAMILY Barwin-like endoglucanases 13 174 IPR036908 -
Tpr5g2860 249 Gene3D - 155 249 IPR036749 -
Tpr5g2860 249 PRINTS Expansin signature 58 72 IPR002963 GO:0009664
Tpr5g2860 249 PRINTS Expansin signature 85 96 IPR002963 GO:0009664
Tpr5g2860 249 PRINTS Expansin signature 99 109 IPR002963 GO:0009664
Tpr5g2860 249 PRINTS Expansin signature 114 131 IPR002963 GO:0009664
Tpr5g2860 249 PRINTS Expansin signature 131 144 IPR002963 GO:0009664
Tpr5g2860 249 PRINTS Expansin signature 155 167 IPR002963 GO:0009664
Tpr5g2860 249 PRINTS Expansin signature 167 188 IPR002963 GO:0009664
Tpr5g2860 249 PRINTS Expansin signature 202 223 IPR002963 GO:0009664
Tpr5g2860 249 PRINTS Expansin signature 231 247 IPR002963 GO:0009664
Tpr5g2860 249 Gene3D - 19 151 IPR036908 -
Tpr5g2860 249 Pfam Lytic transglycolase 64 146 IPR009009 -
Tpr5g2860 249 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 166 245 IPR007117 -
Tpr5g2860 249 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Tpr5g2860 249 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Tpr5g2860 249 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Tpr5g2860 249 PRINTS Expansin/Lol pI family signature 139 155 IPR007118 GO:0005576
Tpr5g2860 249 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576
Tpr5g2860 249 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576
Tpr5g2860 249 SMART dpbb_1 63 146 IPR007112 -
Tpr5g2860 249 PANTHER EXPANSIN-A21-RELATED 10 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2860 Tpr-Chr5 51779307 51780417 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2860 23 249 Expansin Gene Family AT5G39280 61.135 5.84e-103 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2860 - - cam:101510232 351.673