Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2855 ATGTACCCTAGATGCAGGAGTGCCATAGCTGGCATTGACCTAAATTGGTATGATGCTCATGCAACCTTCTACGGTGATCCTTCTAGAGCTGGAACCATGCGATATGGACTTGCAAACACAGCACTAAGCACAGCTCTATTCAATAATGGAGCTACTTGTGGTGCTTGTTTTCAGTTATTTTGTGTCAACGATCCCCAATGGTGCATAAAGGGCGCAAAGCCAATCACAGTAACCGCAACAAATTTTTGTCCTCCAAATTCCGCCCAGCCCGGTGCTTGTAACCCACCACTAAAACACTTTGACTTAAGTTATAAAATGTTCACTTCTATTGCCTACGAAAAAGGCGGTATCATACCCGTTAAATATCGACGTGTTTCATGTGTGAAACAAGGGGGTGTTAGGTTTGAGATCAACGAAAACCCTAATTTCTTGTTTGTTTTGGTGTTCAATGTTGCCAATGCTGGTGATGTTTCTCGTGTTAGTGTCAAAGGGTCTAAGACTGGATGGATTCCCATGAAGCGCAATTTTGGACAAAAGTGGAATACTGGAGTGAATTTGGTAGGACAAGCTTTGTCATTTCAAGTTACTACAAGTGATGGAAAAACTTTGGAGTTTTATTCAGTTTCTCCTTACAACTGGCAATTTGGACAGACTTATCAGAGCCAGGGTAATTTTTAG 678 0.4174 MYPRCRSAIAGIDLNWYDAHATFYGDPSRAGTMRYGLANTALSTALFNNGATCGACFQLFCVNDPQWCIKGAKPITVTATNFCPPNSAQPGACNPPLKHFDLSYKMFTSIAYEKGGIIPVKYRRVSCVKQGGVRFEINENPNFLFVLVFNVANAGDVSRVSVKGSKTGWIPMKRNFGQKWNTGVNLVGQALSFQVTTSDGKTLEFYSVSPYNWQFGQTYQSQGNF* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2855 225 PRINTS Expansin signature 34 48 IPR002963 GO:0009664
Tpr5g2855 225 PRINTS Expansin signature 61 72 IPR002963 GO:0009664
Tpr5g2855 225 PRINTS Expansin signature 75 85 IPR002963 GO:0009664
Tpr5g2855 225 PRINTS Expansin signature 90 107 IPR002963 GO:0009664
Tpr5g2855 225 PRINTS Expansin signature 107 120 IPR002963 GO:0009664
Tpr5g2855 225 PRINTS Expansin signature 131 143 IPR002963 GO:0009664
Tpr5g2855 225 PRINTS Expansin signature 143 164 IPR002963 GO:0009664
Tpr5g2855 225 PRINTS Expansin signature 178 199 IPR002963 GO:0009664
Tpr5g2855 225 PRINTS Expansin signature 207 223 IPR002963 GO:0009664
Tpr5g2855 225 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 142 221 IPR007117 -
Tpr5g2855 225 PANTHER EXPANSIN-A21-RELATED 14 225 - -
Tpr5g2855 225 Gene3D - 4 127 IPR036908 -
Tpr5g2855 225 PRINTS Expansin/Lol pI family signature 15 30 IPR007118 GO:0005576
Tpr5g2855 225 PRINTS Expansin/Lol pI family signature 115 131 IPR007118 GO:0005576
Tpr5g2855 225 PRINTS Expansin/Lol pI family signature 169 183 IPR007118 GO:0005576
Tpr5g2855 225 PRINTS Expansin/Lol pI family signature 207 221 IPR007118 GO:0005576
Tpr5g2855 225 SUPERFAMILY PHL pollen allergen 129 221 IPR036749 -
Tpr5g2855 225 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 19 132 IPR007112 -
Tpr5g2855 225 Pfam Lytic transglycolase 40 122 IPR009009 -
Tpr5g2855 225 SMART dpbb_1 39 122 IPR007112 -
Tpr5g2855 225 SUPERFAMILY Barwin-like endoglucanases 15 150 IPR036908 -
Tpr5g2855 225 Pfam Expansin C-terminal domain 133 210 IPR007117 -
Tpr5g2855 225 Gene3D - 131 225 IPR036749 -
Tpr5g2855 225 PANTHER EXPANSIN-A15 14 225 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2855 Tpr-Chr5 51762978 51764723 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2855 11 225 Expansin Gene Family AT5G39280 55.459 1.00e-88 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2855 - - zju:107415875 307.375