Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2850 ATGTCGCTCAGACCTAATGCTAGAACCGAGGTTCGTCGCAACCGTTATAAGGTTGCCGTTGATGCCGACGAAGGTCGCCGGAGAAGAGAAGATAACATGGTTGAGATCCGTAAAAACAAGCGTGAAGAGAGTCTTCAGAAGAAAAGACGTGAAGGTCTTCAAAATCAACAGTTTTCTACTCCTCTTCAATCTGCTTCCATTGTTGAGAAAAAGTTGGAGAGTCTTCCTGCTATGGTTGCTGGGGTTTGGTCGGATGATAATACCCAACAACTGGAAGCAACTACGCAATTCCGGAAGCTGCTTTCGATTGAACGTAGCCCTCCGATCGAGGAAGTTATTCAATCTGGTGTTGTTCCTCGTTTTGTTGAGTTTCTAGTTAGGGAGGATTTTCCTCAACTTCAGTTTGAGGCTGCTTGGGCTCTCACAAACATAGCATCCGGAACTTCTGATAACACTAAGGTGGTAATTGATCATGGGGCAGTGCCAATCTTTGTCAAGCTACTAAGTTCTCCTAGTGATGATGTTCGTGAGCAGGCTGTGTGGGCATTGGGAAATGTTGCTGGTGACTCCCCTAGGTGCCGTGATCTTGTTCTCAGTCATGGTGCCCTGATCCCGCTGTTATCCCAGTTGAATGAGCAGGCAAAGCTTTCAATGCTGAGAAATGCTACTTGGACCCTGTCAAACTTTTGCAGGGGCAAGCCACAACCTCCATTTGACCAGGTGAGGCCAGCGCTTCCTGCTCTTGAGCGTTTGGTTTTTTCCAATGATGAAGAAGTCTTGACAGATGCATGCTGGGCGCTCTCATATCTTTCTGATGGAACAAATGACAAAATTCAAGCGGTGATCGATGCAGGTGTATGTGGAAGACTGATTCATCTCCTTCTGCACCCATCTCCTTCAGTGCTTATCCCAGCACTTCGCACGGTGGGAAATATTGTAACTGGAGATGATAATCAGACTCAGGCCATTATCAACCATGGGTCACTCCCATGCCTTTTGAGCCTGTTGACCCATAATCATAAGAAAAGCATTAAGAAGGAAGCTTGCTGGACTATATCAAACATTACAGCTGGAAACAGAGAGCAGATACAGGCTGTTATTGAAGCTGGTTTGATTGGTCCCATCGTCAATCTTCTTCAAAATGCCGAGTTTGACATTAAAAAAGAAGCTGCTTGGGCACTCTCTAATGCTACATCTGGTGGTACCCACGAGCAAATCAAGTACTTGGTGAGCCAGGGTTGCATTAAGCCTCTATGTGATTTGCTTATTTGCCCTGATCCAAGAATTGTTACTGTCTGTTTAGAAGGTCTTGAGAATATACTGAAGGTTGGAGAAGTGGAGAAAAGTCTTGGTAACACAGGAGATGTCAACTTATATGCTCAGATGATAGATGATGCTGAGGGATTGGAAAAGATTGAAAACTTGCAGAGTCATGACAACAATGAGATTTATGAGAAGGCTGTTAAAATTCTCGAGACATATTGGTTGGAGGATGAAGACGAGACACTACCATCAGGCGATGGTTCTCAACCTGGTTTTAATTTTGGAAGCAATGACCTTTCGGTCCCATCTGGTGGATTCAACTTCAGTTGA 1593 0.4482 MSLRPNARTEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQFSTPLQSASIVEKKLESLPAMVAGVWSDDNTQQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSDNTKVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSHGALIPLLSQLNEQAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIDAGVCGRLIHLLLHPSPSVLIPALRTVGNIVTGDDNQTQAIINHGSLPCLLSLLTHNHKKSIKKEACWTISNITAGNREQIQAVIEAGLIGPIVNLLQNAEFDIKKEAAWALSNATSGGTHEQIKYLVSQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEVEKSLGNTGDVNLYAQMIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWLEDEDETLPSGDGSQPGFNFGSNDLSVPSGGFNFS* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2850 530 Gene3D - 73 496 IPR011989 -
Tpr5g2850 530 Pfam Importin beta binding domain 12 95 IPR002652 GO:0006606|GO:0061608
Tpr5g2850 530 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 370 398 IPR000225 GO:0005515
Tpr5g2850 530 PANTHER IMPORTIN SUBUNIT ALPHA 2 521 - -
Tpr5g2850 530 MobiDBLite consensus disorder prediction 31 56 - -
Tpr5g2850 530 PANTHER IMPORTIN ALPHA 2 521 - -
Tpr5g2850 530 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 159 201 IPR000225 GO:0005515
Tpr5g2850 530 SUPERFAMILY ARM repeat 6 501 IPR016024 -
Tpr5g2850 530 ProSiteProfiles IBB domain profile. 1 58 IPR002652 GO:0006606|GO:0061608
Tpr5g2850 530 SMART arm_5 148 188 IPR000225 GO:0005515
Tpr5g2850 530 SMART arm_5 316 357 IPR000225 GO:0005515
Tpr5g2850 530 SMART arm_5 233 272 IPR000225 GO:0005515
Tpr5g2850 530 SMART arm_5 274 314 IPR000225 GO:0005515
Tpr5g2850 530 SMART arm_5 189 231 IPR000225 GO:0005515
Tpr5g2850 530 SMART arm_5 105 146 IPR000225 GO:0005515
Tpr5g2850 530 SMART arm_5 402 442 IPR000225 GO:0005515
Tpr5g2850 530 SMART arm_5 359 399 IPR000225 GO:0005515
Tpr5g2850 530 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 327 370 IPR000225 GO:0005515
Tpr5g2850 530 Pfam Armadillo/beta-catenin-like repeat 190 231 IPR000225 GO:0005515
Tpr5g2850 530 Pfam Armadillo/beta-catenin-like repeat 316 357 IPR000225 GO:0005515
Tpr5g2850 530 Pfam Armadillo/beta-catenin-like repeat 148 187 IPR000225 GO:0005515
Tpr5g2850 530 Pfam Armadillo/beta-catenin-like repeat 244 271 IPR000225 GO:0005515
Tpr5g2850 530 Pfam Armadillo/beta-catenin-like repeat 106 146 IPR000225 GO:0005515
Tpr5g2850 530 Pfam Armadillo/beta-catenin-like repeat 275 313 IPR000225 GO:0005515
Tpr5g2850 530 Pfam Armadillo/beta-catenin-like repeat 403 440 IPR000225 GO:0005515
Tpr5g2850 530 Pfam Armadillo/beta-catenin-like repeat 359 398 IPR000225 GO:0005515
Tpr5g2850 530 MobiDBLite consensus disorder prediction 31 50 - -
Tpr5g2850 530 PIRSF Importin_alpha 2 529 IPR024931 GO:0005737|GO:0006606|GO:0061608
Tpr5g2850 530 MobiDBLite consensus disorder prediction 500 519 - -
Tpr5g2850 530 Gene3D - 11 50 IPR036975 GO:0006606
Tpr5g2850 530 Pfam Atypical Arm repeat 457 501 IPR032413 -
Tpr5g2850 530 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 116 159 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2850 Tpr-Chr5 51699703 51703893 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2850 131 394 U-box Gene Family AT3G46510 25.660 1.31e-11 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2850 K15042 - gmx:100808498 1003.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2850 5 51699703 51703893 Tpr5g2850 5 51699703 51703893 ECH
Tpr5g2850 5 51699703 51703893 Tpr1g1392 1 12728140 12733065 ECH
Tpr5g2850 5 51699703 51703893 Tpr6g0330 6 2674099 2679612 ECH
Tpr4g1951 4 20303459 20304992 Tpr5g2850 5 51699703 51703893 PCT