Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2847 ATGTCAGAAGGAGCCAGTCTTGTGCTAGAATCATCTGAAAATGGCACAGATTTGTCTCAGGATGACATTGGCACTGTTGAGGAAACACCAGAGGAAACAATCTTGTCAAGACAAACTTCTGTTAACCTTGTTCCTTTTATTGGTCAGAGATTTGTCTCTCAAGAAGCTGCTTATGAGTTTTATTGCAGTTTTGCTAAACAATTTGGCTTTTCTATTAGACGACACCGCACCCGAGGGAAAGATGGGGTTGGCCGAGGAGTTACAAGGAGGGATTTTACTTGCCATCGCGGCGGATTTCCCCAGAATAAACCTTCTGAAGATGGGGGAGGGGGGAAGGCGCAAAGGAACCGTAAATCATCTCGCTGTGGTTGCCAAGCATACATGCGGATAGTGAAAAGGGTAGATTTTGATGTTCCTGAATGGCGTGTTACTGGTTTTAGAAATATCCACAATCACGAGTTGTTAAAATCCAATGAGGTGCATCTTCTTCCATCACACTGTCCGATATCTCCTGATGATAAGAGCCGCATATGCATATTTGCTAAAGCTGGAATGTCAGTCAGGCAAATGCTAAGATTAATGGAGCTAGAGAAAGGCATCAAACTTGGTTGTCTTCCTTTTACAGAGATAGATGTGAGAAACTTGTTGCAATCTTTCAGAAATGTGGATAAAGATAATGATGCTATTGATCTGATTGCTATGTGTAAGAGATTAAAGGATGAAAATCACAACTTCAAGTATGAATTCAAGATAGATAGTAATAACAGGCTTGAGTACATCGCATGGTCCTACGGCTCATCAATTCAATCATACGAGGTATTTGGTGATGCTGTGGTTTTTGATACAACGTACCGAGTAGAAGCTTATGATATGCTGTTGGGAATTTGGCTTGGAGTGGACAATAATGGAATGCTATGTTGCTTTAGTTGTGCACTTCTACGTGATGAAAATATGCTGTCTTTTTCATGGGCCTTAAAGGCTTTCTTGGGCTTCATGAAAGGAAAAGCTCCACAAACAATACTGACGGATCACAACACGTGGCTGAAAGACGCTATTGCTGTTGAAATGCCTGAAAGTAAACACGCGTTTTGTATATGGCATATTCTTTCCAAGTTCTCTGACTGGTTTTCTATACTTCTTGGATCACAATATGACTTGTGGAAAGCTGAGTTCCATCGGCTCTACAATTTGGAAATGGTGGATGATTTCGAAGAAGGCTGGAGGCTAATGGTCAATAAATATGGACTCCATGCAAATAAACATATTATTAGCCTATACTCATTAAGGACATTTTGGGCTTTACCATTCTTGAGACGATACTTCTTTGCAGGATTAACCAGTACATGTCAGACCGAGTCCATTAATGTTTTCATTCAACGGTTCTTGAGTGCACAATCTCAACCAGATCGCTTTTTAGAGCAAGTGGCTGATATTGTTGATTTTAATGACCGAGCCGGACCAAAGCAAAAGATGCAAAGGAAAATGCAGAAAGTGTGCCTCAAAACAGGTTCACCTATAGAATCCCATGCTGCCACTATACTTACTCCTTATGCCTTGAGCAAACTTCAAGAAGAGCTAGTTTCGGCACCACAATATGCATCATTTCTGGTTGATGAAGGTGTTTTCCAGGTCAGACACCACTCTCAGACTGATGGAGGTTGCAAAGTGCTTTGGCTTCCTTGTCAAGAGCACATCAGCTGCACCTGCCATCTGTTTGAGTTTTCAGGCATCTTATGTAAACATGTCCTACGAGTCATGTCAACTAATAACTGTTTTCACATCCCGGATCAATATTTACCAGTCCGTTGGCGAAGCATTGGTTCGTCTTCTCTTAACCATTTTCAGGGTACAACTAGCAGGGATCAGCCTGAAAGGATACAATTTTTGGAATCATTGGTTTCAACACTTCTAATGGAATCCGTTGAAACTGATGAACGCCTTGATGTTGCTTGTGACCAAGTTTCCATGGTGCTATCACGTATCAAAACTCTTCCCCGATCATCACACGGGGTAAATGACATTACATTTAATTATGCATCAGATTCATTGATACCGCCAGAGGTAGAAGATACTGACGAAATGATTCATGGTTTTACAATTGCAAATACTCATGATTCTATGGCTTTAGGCAAGTTAAAGGATAGAAGGGCAAGAGACGGAGTTGATCTCAGTAGAAAATGTAGGCAGTTCTCAGCACCATTATGTGGACAATATGGACATGATGAATCTGATTGCTCAATAATGGCAGATGATAATATAAATGAAGATGCATTAGGGTATATGCAGTAA 2289 0.4085 MSEGASLVLESSENGTDLSQDDIGTVEETPEETILSRQTSVNLVPFIGQRFVSQEAAYEFYCSFAKQFGFSIRRHRTRGKDGVGRGVTRRDFTCHRGGFPQNKPSEDGGGGKAQRNRKSSRCGCQAYMRIVKRVDFDVPEWRVTGFRNIHNHELLKSNEVHLLPSHCPISPDDKSRICIFAKAGMSVRQMLRLMELEKGIKLGCLPFTEIDVRNLLQSFRNVDKDNDAIDLIAMCKRLKDENHNFKYEFKIDSNNRLEYIAWSYGSSIQSYEVFGDAVVFDTTYRVEAYDMLLGIWLGVDNNGMLCCFSCALLRDENMLSFSWALKAFLGFMKGKAPQTILTDHNTWLKDAIAVEMPESKHAFCIWHILSKFSDWFSILLGSQYDLWKAEFHRLYNLEMVDDFEEGWRLMVNKYGLHANKHIISLYSLRTFWALPFLRRYFFAGLTSTCQTESINVFIQRFLSAQSQPDRFLEQVADIVDFNDRAGPKQKMQRKMQKVCLKTGSPIESHAATILTPYALSKLQEELVSAPQYASFLVDEGVFQVRHHSQTDGGCKVLWLPCQEHISCTCHLFEFSGILCKHVLRVMSTNNCFHIPDQYLPVRWRSIGSSSLNHFQGTTSRDQPERIQFLESLVSTLLMESVETDERLDVACDQVSMVLSRIKTLPRSSHGVNDITFNYASDSLIPPEVEDTDEMIHGFTIANTHDSMALGKLKDRRARDGVDLSRKCRQFSAPLCGQYGHDESDCSIMADDNINEDALGYMQ* 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2847 762 Pfam MULE transposase domain 278 370 IPR018289 -
Tpr5g2847 762 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 8 742 IPR031052 GO:0006355
Tpr5g2847 762 MobiDBLite consensus disorder prediction 93 117 - -
Tpr5g2847 762 Pfam SWIM zinc finger 564 587 IPR007527 GO:0008270
Tpr5g2847 762 MobiDBLite consensus disorder prediction 1 22 - -
Tpr5g2847 762 PANTHER FAR1 DNA BINDING DOMAIN, ZINC FINGER, SWIM-TYPE, MULE TRANSPOSASE DOMAIN, FHY3/FAR1 FAMILY-RELATED 8 742 - -
Tpr5g2847 762 SMART 26again6 565 592 IPR006564 GO:0008270
Tpr5g2847 762 ProSiteProfiles Zinc finger SWIM-type profile. 542 590 IPR007527 GO:0008270
Tpr5g2847 762 Pfam FAR1 DNA-binding domain 59 155 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2847 Tpr-Chr5 51669299 51675210 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tpr5g2847 FAR1 1e-18 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2847 - - gmx:100778434 1385.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2847 5 51669299 51675210 Tpr5g2847 5 51669299 51675210 ECH