Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2842 ATGCAACAAGAGTACTCTACCATAGCCATATTAGTGTCTGTAACCAATATGGGAAGAGCTCCTTGTTGTGAGAAAATTGGATTGAAGAAAGGAAGATGGACTGCTGAAGAAGATAAGATCTTGACCGATTACATCAAACAAAATGGTGAAGGGTCTTGGCGGTTTTTGCCTAAGAAAGCAGGTTTGTTAAGGTGTGGGAAGAGTTGCAGATTGAGATGGATAAATTATTTGAGAGCAGATGTGAAGAGAGGCAACATAGCTCCTCATGAGGAAGAAATCATTGTCAAGTTACATGCTGTTCTTGGAAATAGGTGGTCTGTGATAGCATCACATTTACCCGGACGAACAGATAATGAGATAAAGAATTACTGGAACTCTCATTTAAGAAGAAAAATTTATTGCTTCATGAGATCTATAAATGAGTCTCCACCACCACTACCACCGCTTGACATGGCATCTACATCCAAAAAATTATTTAATGGGAAAAAAATTAATCCAAAAATAGAAGAGAACAATAACATGTCCCTTGAACCAATTATGCCTAAAGAAGTTGAAGAAATTTCAATGAATAATGTTTTTTATGAAATGGAGGGTAATAATAATAATATAAATAATTCAATTTTATCATACCCTAGCAAGATTAATGAATTAGCTATTGATGAAGGTTTAGGACCATATAAATGGCTTGATGATGAAATTATGAAACTTCGTACCATGTTTGAAAATGGGATGAGGAGTTATGTTACACATCATGAGAATAATGAAAAGGGTATTAATGATTATGATTATAAGAATATGCATGTGGAAATAATGGAAAAAAATAAGGAAATGAAAAGTGACATTATTTGGGGAGAATCATCTAATGGAGAATGTGGAGAGTTGTACAATTGTTGTTCATCAGGGAATTCTGCCACAGATTATGATCAATTGTCTGATTGGGATTTTTGTGAAGAAGAAAAAATGAAGAGTTGCTTGTGGGGTACAGGTATTGGTGAAATCATGAATGGTTTTTATTAG 1017 0.3412 MQQEYSTIAILVSVTNMGRAPCCEKIGLKKGRWTAEEDKILTDYIKQNGEGSWRFLPKKAGLLRCGKSCRLRWINYLRADVKRGNIAPHEEEIIVKLHAVLGNRWSVIASHLPGRTDNEIKNYWNSHLRRKIYCFMRSINESPPPLPPLDMASTSKKLFNGKKINPKIEENNNMSLEPIMPKEVEEISMNNVFYEMEGNNNNINNSILSYPSKINELAIDEGLGPYKWLDDEIMKLRTMFENGMRSYVTHHENNEKGINDYDYKNMHVEIMEKNKEMKSDIIWGESSNGECGELYNCCSSGNSATDYDQLSDWDFCEEEKMKSCLWGTGIGEIMNGFY* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2842 338 CDD SANT 88 128 IPR001005 -
Tpr5g2842 338 SUPERFAMILY Homeodomain-like 27 124 IPR009057 -
Tpr5g2842 338 Gene3D - 87 132 - -
Tpr5g2842 338 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 18 306 - -
Tpr5g2842 338 CDD SANT 32 77 IPR001005 -
Tpr5g2842 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 78 132 IPR017930 -
Tpr5g2842 338 ProSiteProfiles Myb-like domain profile. 78 128 IPR001005 -
Tpr5g2842 338 SMART sant 29 79 IPR001005 -
Tpr5g2842 338 SMART sant 82 130 IPR001005 -
Tpr5g2842 338 PANTHER MYB TRANSCRIPTION FACTOR 18 306 - -
Tpr5g2842 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 25 77 IPR017930 -
Tpr5g2842 338 Pfam Myb-like DNA-binding domain 88 128 IPR001005 -
Tpr5g2842 338 Pfam Myb-like DNA-binding domain 30 77 IPR001005 -
Tpr5g2842 338 Gene3D - 29 82 - -
Tpr5g2842 338 ProSiteProfiles Myb-like domain profile. 25 77 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2842 Tpr-Chr5 51596733 51601259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2842 17 236 MYB Transcription Factor Family AT5G49330 52.609 6.43e-73 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr5g2842 Myb_DNA-binding 1.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2842 K09422 - gmx:100819041 364.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2842 5 51596733 51601259 Tpr5g2842 5 51596733 51601259 ECH