Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2827 ATGCAGATCTTCGTCAAAACTTTGACCGGAAAGACTATCACTCTCGAGGTTGAGAGCAGCGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATCTCTCCTGACCAGCAGAGGTTGATTTTTGCTGGTAAGCAGCTGGAAGATGGCCGCACTCTTGCTGATTATAACATTCAAAAGGAATCAACGCTTCACTTGGTCCTAAGGCTCAGGGGAGGAACCATGATTAAAGTGAAGACTTTAACTGGAAAAGAGATTGAAATTGACATTGAGCCAACTGATACAATTGATCGTATCAAGGAACGTGTTGAAGAAAAGGAGGGAATTCCACCTGTGCAGCAAAGGCTCATATATACTGGTAAGCAGCTTGCTGATGATAAAACAGCTAAAGAGTACAACATTGAGGGTGGTTCCGTGCTTCACTTGGTGCTTGCATTGAGGGGTGGTAATTAA 462 0.4481 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGISPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYTGKQLADDKTAKEYNIEGGSVLHLVLALRGGN* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2827 153 SUPERFAMILY Ubiquitin-like 78 152 IPR029071 -
Tpr5g2827 153 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Tpr5g2827 153 ProSiteProfiles Ubiquitin domain profile. 77 152 IPR000626 GO:0005515
Tpr5g2827 153 ProSitePatterns Ubiquitin domain signature. 103 128 IPR019954 -
Tpr5g2827 153 PRINTS Ubiquitin signature 11 31 IPR019956 -
Tpr5g2827 153 PRINTS Ubiquitin signature 32 52 IPR019956 -
Tpr5g2827 153 PRINTS Ubiquitin signature 53 74 IPR019956 -
Tpr5g2827 153 PANTHER UBIQUITIN 1 152 - -
Tpr5g2827 153 CDD Ubl_NEDD8 79 152 IPR038738 -
Tpr5g2827 153 PANTHER - 1 152 - -
Tpr5g2827 153 CDD Ubl_ubiquitin 1 76 - -
Tpr5g2827 153 Gene3D - 1 77 - -
Tpr5g2827 153 Gene3D - 78 153 - -
Tpr5g2827 153 SMART ubq_7 1 72 IPR000626 GO:0005515
Tpr5g2827 153 SMART ubq_7 77 148 IPR000626 GO:0005515
Tpr5g2827 153 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Tpr5g2827 153 Pfam Ubiquitin family 79 150 IPR000626 GO:0005515
Tpr5g2827 153 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2827 Tpr-Chr5 51353044 51353875 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2827 1 76 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.684 3.17e-49 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2827 K12158 - zju:107403728 285.034