Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2817 ATGTTTGTTTTTGCATCTTTCATTTCCAGTGAAATTCCACAAACACTACAATTCTCAAAACCCATAAAGATCAAAACTTTCTCTTCAATCCAACCACCCCACTATTTCTCTTCCACTTCCATAAGATTTTGCATCAGGACTCAAGTTCCTTTCTCTACAAAGGTCTTCTTTTGTCAGGCAAAATCTGGCACAAATGAGTCATTAAACATAAAAGTGTTGCCTCCAACCCTATTAGCGGCCGAAAAAGAAGAAGCCAAGGCTGTATTAACCTTGTTTTTGAGGAAACAAGGTTTGAGCAATGCAAATGCAGCAAGAACCATCAATAAATCAGATCCTTTTATCGACCACCTTCTCTCAAAGCTTCACTCTAAACACAAAACTTGGTACCTTTCAGGTAGAGAGCTTACAACTCTTGAGATTAGGGATGCTCTTATCTCTTATCTTGAATCGCTTTTCCAGGAGCATGGAGACGTTCTAATCGATGTAGTGGAAAACTATCCAAACCCACCAGTTAAGGATAAAACAGCCGTGCCGATTACCCCTTCTAATCCTAGTCCAGTTGTAGACACTAAGAAGCTTAAAACAGTGAGTGGTACAGATCCTGCAGCGGGCAACCTTCGCCCTCATATTGTTTATCTTATGGAATTTGGAATGGATAGCGATCAGATTAGGCTTATTATGCGACGATTCCCGGCTTTTGCCTACTATAGTTTAGAGGGTAAAATTAAGCCATTGGTTGAGTTTTTTCTTGAACTTGGAGTGCCGAAAGAACAAATTCCTATTATCCTCACTAAAAGACCTCAATTATGTGGAATCAGTCTATCTGAAAATCTTAAGCCTACCATGAAATTCTTCGAATCTTTGGGCGTCGACAAAAAACAATGGGCAAAGGTGATTTACCGCTTCCCTGCCTTGCTAACTTATAGTAGGCAGAAGATTAATGAAAGTGTAGATTATCTCCGTGAATTAGGCATCTCAGACGAGAGCATAGGTAAGATTTTAACTCGTTGCCCTAATATTGTTAGTTACAGTGTAGAGGACAATCTCCGACCAACAGCAACATACTTCCGTTCTTTAGGGGTTGATGTTGGCGCCCTTTTGTTCAGGTGTCCGCAAAATTTTGGTCTTAGCATTGAGGCGAATATAAAGCCTGTAACAAGATTTTTCTTGGAAAGGGGATATACTTTGAAAGAAATTGGGACTATGATTACGAGATATGGAATGTTGTATACTTTTAGCTTAACTGAGAATATGATGCCAAAATGGGATTACTTTATGACTATGGATTACCCGAAATCCGAGCTAGTTAAATTCCCTCAATTTTTTGGATACAGTTTAGAACAAAGGATTAAACCGAGATATGCACGCGTCAAAAAAGCCGGGGTGAGATTACTGTTGAATCAGGTTCTTTCACTGTCAAACAGCAACTTTGAAGAGGTCTTAAAAAAGAAAATAAAGAAATTGCAAAATGATTAG 1476 0.3889 MFVFASFISSEIPQTLQFSKPIKIKTFSSIQPPHYFSSTSIRFCIRTQVPFSTKVFFCQAKSGTNESLNIKVLPPTLLAAEKEEAKAVLTLFLRKQGLSNANAARTINKSDPFIDHLLSKLHSKHKTWYLSGRELTTLEIRDALISYLESLFQEHGDVLIDVVENYPNPPVKDKTAVPITPSNPSPVVDTKKLKTVSGTDPAAGNLRPHIVYLMEFGMDSDQIRLIMRRFPAFAYYSLEGKIKPLVEFFLELGVPKEQIPIILTKRPQLCGISLSENLKPTMKFFESLGVDKKQWAKVIYRFPALLTYSRQKINESVDYLRELGISDESIGKILTRCPNIVSYSVEDNLRPTATYFRSLGVDVGALLFRCPQNFGLSIEANIKPVTRFFLERGYTLKEIGTMITRYGMLYTFSLTENMMPKWDYFMTMDYPKSELVKFPQFFGYSLEQRIKPRYARVKKAGVRLLLNQVLSLSNSNFEEVLKKKIKKLQND* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2817 491 Pfam mTERF 309 478 IPR003690 GO:0003690|GO:0006355
Tpr5g2817 491 Pfam mTERF 74 320 IPR003690 GO:0003690|GO:0006355
Tpr5g2817 491 PANTHER CGI-12 PROTEIN-RELATED 44 489 IPR003690 GO:0003690|GO:0006355
Tpr5g2817 491 Gene3D Transcription termination factor 3, mitochondrial 268 487 IPR038538 -
Tpr5g2817 491 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF5, CHLOROPLASTIC 44 489 - -
Tpr5g2817 491 SMART mt_12 331 362 IPR003690 GO:0003690|GO:0006355
Tpr5g2817 491 SMART mt_12 432 463 IPR003690 GO:0003690|GO:0006355
Tpr5g2817 491 SMART mt_12 400 431 IPR003690 GO:0003690|GO:0006355
Tpr5g2817 491 SMART mt_12 224 255 IPR003690 GO:0003690|GO:0006355
Tpr5g2817 491 SMART mt_12 296 326 IPR003690 GO:0003690|GO:0006355
Tpr5g2817 491 SMART mt_12 260 291 IPR003690 GO:0003690|GO:0006355
Tpr5g2817 491 SMART mt_12 364 395 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2817 Tpr-Chr5 51194692 51198590 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Tpr5g2817 mTERF 9e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2817 K15032 K12177 gmx:100781900 716.457