Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2808 ATGCTTCCTGTCAATCATAGTGCTATTGAGGGGGCAGCACAGCCAGTTATTGGTCCCGATGGAAAGAGGAGAGAAACGGAGAGCAATGTACTTTTGGCTTCCATTGAAAATATGCAGTATGCTGTTACTGTTGAGGTCATCAACACGGTTTTTTCTGCATTTGGTACTGTCCAGAAAATTGCCATGTTCGAAAAGAATGGTCAAACTCAGGCACTAATTCAGTACCCAGATGTTACGACGGCAGCAGCTGCTAGAGAAGCTTTAGAGGGGCATTGCATATATGATGGTAGCTATTGTAAGTTTCATCTATCATACTCTCGTCATACTGATCTCAATGTAAAGGCTTTCAGTGACAAAAGTAGAGACTATACAGTACCACAAGTTCCTGTAACATCTTGGCAAAATCCTCAGGCTGCACCTATGTACCCAACCAGTTCCCCTGGTTTTCAGACTCAAGTTCCTGGAGGACAAGGGCCATCATGGGATCTAACTCAGCATGCAGTTAGACCGGGTTATGTACCTGTTCCCGGTGCTTATCCTGTTCAAAATGGTGCATATCCTACTATGCCCGCCTACGCGTCCGCAGCTATGCCTACCGCTTCCTGGCCTCTTGCTCAAAGATCCCATCCCGGGGTTCCACCCAATGTAAATTTACAGCCTAGTGGTGGTTCAACTTCCGGTCCTGGTTCCTCGCCTCACATGCAAACCAGCTTTGGTGCTCAAGGATTGGTTCGGCCTGGGGTGCAGCCAAATGCGAGACCTGGTGGTGATTCACCTTCAGGTCAGCATTATTATGGTTAG 801 0.4744 MLPVNHSAIEGAAQPVIGPDGKRRETESNVLLASIENMQYAVTVEVINTVFSAFGTVQKIAMFEKNGQTQALIQYPDVTTAAAAREALEGHCIYDGSYCKFHLSYSRHTDLNVKAFSDKSRDYTVPQVPVTSWQNPQAAPMYPTSSPGFQTQVPGGQGPSWDLTQHAVRPGYVPVPGAYPVQNGAYPTMPAYASAAMPTASWPLAQRSHPGVPPNVNLQPSGGSTSGPGSSPHMQTSFGAQGLVRPGVQPNARPGGDSPSGQHYYG* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2808 266 Gene3D - 27 132 IPR012677 -
Tpr5g2808 266 MobiDBLite consensus disorder prediction 221 238 - -
Tpr5g2808 266 Pfam RRM-like domain 27 102 IPR021790 -
Tpr5g2808 266 SUPERFAMILY RNA-binding domain, RBD 35 129 IPR035979 GO:0003676
Tpr5g2808 266 CDD RRM3_PTBPH1_PTBPH2 28 124 IPR034794 -
Tpr5g2808 266 PANTHER OS02G0789700 PROTEIN 2 235 - -
Tpr5g2808 266 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 28 106 IPR000504 GO:0003723
Tpr5g2808 266 MobiDBLite consensus disorder prediction 221 266 - -
Tpr5g2808 266 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 2 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2808 Tpr-Chr5 51057175 51059884 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2808 1 94 Eukaryotic Initiation Factors Gene Family AT3G16380 26.263 2.18e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2808 K14948 - gmx:100788927 382.874