LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr5g2802	ATGACGTCTCGTCCGTCGCCCGGCGTCAAAAGCAGCAACGGCGGACGGCCTAGAGCTGGTAAGTATGAGCTTGGTAGGACGCTTGGCGAAGGAAATTTTGCGAAGGTGAAGTTTGCTAGACATGTTGAAACTGGAGAACATGTAGCTATCAAAATTCTTGATAAGGAAAAAATTCTCAAGCACAAAATGATTCGTCAGATAAAGCAAGAAATATCAACAATGAAACTGATTAGACACCCAAATGTCATACGCATGCATGAGGTAATAGCGAACAGGTCAAAGATATTCATTGTAATGGAAATTGTGACTGGTGGGGAGCTGTTTGATAAAATTGCACGCAATGGGAGGTTGAAAGAAGATGAAGCAAGAAAATACTTTCAGCAGCTTATATGTGCTGTGGATTACTGTCATAGTAGAGGTGTTTGCCACAGAGACCTAAAGCCTGAGAATTTGTTGCTGGATGCTAACGGAGTTCTTAAAGTATCGGATTTTGGATTGAGTGCATTGCCTCAACAAGTTCGGGAAGATGGGCTACTTCACACAACATGTGGTACTCCAAATTATGTTGCTCCAGAGGTGATCCAAAACAAAGGGTATGATGGTGCAATTGCAGATCTCTGGTCATGTGGTGTTATTCTTTTCGTTTTAATGGCTGGCTATTTGCCCTTTGAAGAAGACAATCTTGTGGCTTTATATAAAAAGATTTTCAAGGCTGAGTTCACATGTCCTCCCTGGTTCTCTTCAAGTGCAAAGAAACTAATCAAAAGAATCCTTGATCCCAGTCCTGTCACACGGATTAAAATTGCCGATGTCATTGAAAATGAGTGGTTCAAGAAGGGATATACGCCTCCTGTGTTTGAACAGGCCGATGTTAGTCTTGATGATGTAAACTCTATTTTCGGCGGTTCTATGGATTCAGATAGTATTGTTTTTGAGAAGCAAGAAGAAGGGCCTGTTGCACCTGTGACAATGAATGCGTTTGAACTTATCTCTAAGTCTCGGGGCCTCAACCTTGGTAGCCTTTTTGAGAAGCAAATGGGACTTGTTAAAAGGGAAACAAGATTCACATCCAAATGTTCAGCGAATGAGATAATTGCAAAAATCGAGGAAACTGCTGGACCTCTGGGTTTTGACGTAAGGAAGAACAACTGCAAGTTAAGGATTCATGGGGAAAAATCTGGACGGAAAGGTCATCTATCTGTAGCCACGGAGATCTTGGAGGTGGCCCCTTCAGTTTACATGGTTGAGATGCGAAAATCTGAAGGAGATACTCTGGAATTTCACAAGTTCTACAAAAATATATCTACTGGGCTGAAAGATATTGTTTGGAAAGCAGATCCTATTGCTGAAGAAAGTGATGATGGTGCCAGTACCTCCTCAAAATAA	1386	0.417	MTSRPSPGVKSSNGGRPRAGKYELGRTLGEGNFAKVKFARHVETGEHVAIKILDKEKILKHKMIRQIKQEISTMKLIRHPNVIRMHEVIANRSKIFIVMEIVTGGELFDKIARNGRLKEDEARKYFQQLICAVDYCHSRGVCHRDLKPENLLLDANGVLKVSDFGLSALPQQVREDGLLHTTCGTPNYVAPEVIQNKGYDGAIADLWSCGVILFVLMAGYLPFEEDNLVALYKKIFKAEFTCPPWFSSSAKKLIKRILDPSPVTRIKIADVIENEWFKKGYTPPVFEQADVSLDDVNSIFGGSMDSDSIVFEKQEEGPVAPVTMNAFELISKSRGLNLGSLFEKQMGLVKRETRFTSKCSANEIIAKIEETAGPLGFDVRKNNCKLRIHGEKSGRKGHLSVATEILEVAPSVYMVEMRKSEGDTLEFHKFYKNISTGLKDIVWKADPIAEESDDGASTSSK*	462

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Tpr5g2802	461	SMART	serkin_6	22	277	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Tpr5g2802	461	Gene3D	Phosphorylase Kinase; domain 1	11	101	-	-
Tpr5g2802	461	ProSitePatterns	Protein kinases ATP-binding region signature.	28	51	IPR017441	GO:0005524
Tpr5g2802	461	MobiDBLite	consensus disorder prediction	1	22	-	-
Tpr5g2802	461	CDD	CIPK_C	325	440	-	-
Tpr5g2802	461	ProSiteProfiles	Protein kinase domain profile.	22	277	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Tpr5g2802	461	PANTHER	NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE	16	449	-	-
Tpr5g2802	461	Gene3D	Transferase(Phosphotransferase) domain 1	102	283	-	-
Tpr5g2802	461	CDD	STKc_SnRK3	21	276	-	-
Tpr5g2802	461	Pfam	NAF domain	321	381	IPR004041	GO:0007165

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr5g2802	Tpr-Chr5	50797222	50803688	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr5g2802	10	451	CBL-interacting serine-threonine protein kinases	AT1G01140	67.411	0.0	641

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-CHK1	Tpr5g2802		Pkinase	7.1e-72	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr5g2802	-		-	gmx:100788746	776.933

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tpr5g2802	5	50797222	50803688	Tpr5g1512	5	28823828	28828526	PCT

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