Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2792 ATGGGGAGGAAAAAGAAGCAAGTAGGAGAAACAAGTGAAGAAAATGGGAATCATAATAAGGTCGAGGATAAAAGCTCGAATGCATATGATAATGATACTATGATATTTATATGTAAGGCTCACGAGTTGAAGGAAGAAGGAAACAGGATGTTCCAAAAGAGGGATCTTCAAGGAGCTATGGTAAAGTATGAGAAAGCACTCAAATTGCTTCCGACAAAGCATATTGATGTGTCATATGTGCGGAGTAACATGGCTGCATGCTATATGCAGATGGGACTTGGTGAGTACCCTAGGGCGATAAATGAATGTAATTTGGCTCTTGAAGTTACTCCGAAATACAGTATAGCTTTGTTGAAGAGAGCGAGGTGCTATGAGGCTTTGAATAGACTGGATTTAGCATTGACTGATGTTAGTGCTGTTTTGAGTATGGAGCCGAATAATATCATGGCATTGGAGATCTCGGGTAAGGTGAAACGGGAACTTGAAGATAGAGGGTTAAGAGTGAACGATGCGCAAATTGAGTTGCCTCCGGATTATGTTGAACCTCCTTTTGCCGTGCCTTCTGAAAAGGTAGCGAAAGAAAAGAAACACAAGAAGAAGAGCAAAAAAGAGAAGGTCAAGGCTACTGATGAAATTTTAGCGAAGCAAGCTGAGGAGAAACTTGAAGAGAAGAAAGACGAGGACAATATTGAAGCAATTGAGGCGGAGGGCGGTCACAAAGATAAAAAAAAGGCTAATAAATCTAAAAAGAAGGCGGCCAAGGAAAAAAAAGAAAAAAAGAAAGATGATGTTAAAGAGGTCAATGCTGAAAAATGTAACGGTAGAAGTGAAGATGTACCTAAGAAAACAGCAAAACTTATTTTTGGCGATGATATAAGATGGGCTCAATTGCCGGTTAATTGCAGCCTCTTTCAGCTAAGAGAAGTTATTTGTGACCGGTTCCCGAGCTTAGGAGCAGTTCTTGTCAAATATAGAGATCAAGAAGGTGATTTGATCACAATCACTTCTGATGAAGAATTGAAGTGGGCTGAAACAGGATTGCAGGGTTCTGTCCGACTGTATATAGTAGAAGCTAATCCTAACCACGATCCATTCTATCAGAAACTTCATGTGAAGGATGTTGAAATTGATAATGCTGCTACGAATGGTTGCATGATGAAATCAAAGGAAATTATTATCTCATCTTGTATTGAGGATTGGGTAATTCAGTTTGCACAATTGTTCAAGAGCCACGTTGGATTTGAATCTGACAGATACTTAGATTTTCATGAACTCGGGATGAAGCTCTATTCAGAAGCTGTGGAAGAGACTATTACAAGCGAAGAAGCGCAAGGCCTTTTTGACATGGCAGGAGGAAAATTCCAAGAGATGACAGCTATAGCATTGTTCAATTGGGGAAATGTGCATATGTCCAGAGCAAGGAAGAAAGTCTATTTAACCGATGATTCTTCTAAAGAGCATATGCATGAACAAATAAAAAGTTCATATGAATGGGCGCAGAATGAATATGTAAAAGCCGGAGAAAAATTTGAAGCAGCCATTAAAATTAAGTCAGAATTTTTTGAAGGCTTCCTTGCTCTAGGTCAGCAGAGGTTTGAACAAGCGAAACTTTCTTGGTATTACGCACTAAGTAGTAATATAGATTTAGCAACATGGCCCTCCACAGAGGTTCTTCATCTTTACAACAGTGCTGAGGAGAATATGGAGAAAGGAATGCTGATATGGGAAGAATCGCAAGAGCAGCAGCTGAGTGAAACCTCCAATATTGGATTGGACAGGCTATTTAAAAATATGTCATCGGGTGAAACTGCTTCACTGGTGGCAAACATGAGGTCTCAGATAAATCTCTTGTGGGGTACCATGCTATACGAACGCTCGATTTTGGAATTCAAATTAGGGCTACCAGTATGGCATGAGTCTTTGGAAGTTTCAATTGAGAAGTTTGAACATGCAGGAGCTTCTCCAACGGATACAGCTGTAATGTTGAAAAACCACTGTTCAAATAACACTGCTGTAGAAGGTCTAGGTTTCAAAATTGATGAAATAGTACAGGCATGGAATGAGATGTATGAAGCTAAAAAGTTGCAGAAAGGAGTTCTGTCCTTTCGCTTAGAACCCTTGTTCAGAAGAAGAGTATCAAAAATATACCACGCCTTTGAGCTTGTATGA 2169 0.3965 MGRKKKQVGETSEENGNHNKVEDKSSNAYDNDTMIFICKAHELKEEGNRMFQKRDLQGAMVKYEKALKLLPTKHIDVSYVRSNMAACYMQMGLGEYPRAINECNLALEVTPKYSIALLKRARCYEALNRLDLALTDVSAVLSMEPNNIMALEISGKVKRELEDRGLRVNDAQIELPPDYVEPPFAVPSEKVAKEKKHKKKSKKEKVKATDEILAKQAEEKLEEKKDEDNIEAIEAEGGHKDKKKANKSKKKAAKEKKEKKKDDVKEVNAEKCNGRSEDVPKKTAKLIFGDDIRWAQLPVNCSLFQLREVICDRFPSLGAVLVKYRDQEGDLITITSDEELKWAETGLQGSVRLYIVEANPNHDPFYQKLHVKDVEIDNAATNGCMMKSKEIIISSCIEDWVIQFAQLFKSHVGFESDRYLDFHELGMKLYSEAVEETITSEEAQGLFDMAGGKFQEMTAIALFNWGNVHMSRARKKVYLTDDSSKEHMHEQIKSSYEWAQNEYVKAGEKFEAAIKIKSEFFEGFLALGQQRFEQAKLSWYYALSSNIDLATWPSTEVLHLYNSAEENMEKGMLIWEESQEQQLSETSNIGLDRLFKNMSSGETASLVANMRSQINLLWGTMLYERSILEFKLGLPVWHESLEVSIEKFEHAGASPTDTAVMLKNHCSNNTAVEGLGFKIDEIVQAWNEMYEAKKLQKGVLSFRLEPLFRRRVSKIYHAFELV* 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2792 722 Pfam PB1 domain 283 356 IPR000270 GO:0005515
Tpr5g2792 722 MobiDBLite consensus disorder prediction 232 269 - -
Tpr5g2792 722 Gene3D Tetratricopeptide repeat domain 38 168 IPR011990 GO:0005515
Tpr5g2792 722 Coils Coil 207 227 - -
Tpr5g2792 722 SUPERFAMILY CAD & PB1 domains 283 367 - -
Tpr5g2792 722 ProSiteProfiles TPR repeat profile. 40 73 IPR019734 GO:0005515
Tpr5g2792 722 PANTHER PROTEIN CLMP1 3 721 IPR044517 -
Tpr5g2792 722 SUPERFAMILY TPR-like 40 163 IPR011990 GO:0005515
Tpr5g2792 722 MobiDBLite consensus disorder prediction 1 24 - -
Tpr5g2792 722 Coils Coil 240 270 - -
Tpr5g2792 722 SMART tpr_5 114 147 IPR019734 GO:0005515
Tpr5g2792 722 SMART tpr_5 78 113 IPR019734 GO:0005515
Tpr5g2792 722 SMART tpr_5 40 73 IPR019734 GO:0005515
Tpr5g2792 722 SMART PB1_new 281 358 IPR000270 GO:0005515
Tpr5g2792 722 CDD PB1 285 355 - -
Tpr5g2792 722 ProSiteProfiles PB1 domain profile. 281 358 IPR000270 GO:0005515
Tpr5g2792 722 PANTHER PROTEIN PHOX3 3 721 - -
Tpr5g2792 722 MobiDBLite consensus disorder prediction 186 208 - -
Tpr5g2792 722 Gene3D - 251 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2792 Tpr-Chr5 50414693 50426861 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2792 23 147 Calmodulin-binding Proteins AT3G25230 32.117 6.82e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2792 - - gmx:100820306 1061.21