Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2780 ATGACAACAACACTCTCTTCCCTTTTCTTCCTCTTCTCTCTCCTCACCTTTTCTCTCATTTCCTCTTCACCCCTTCAAGACCCTCATTTGGTTACTCAAGAAGTTAACAGGAAAATCAATGGCTCATTAGCTAGGAGGAATTTGGGATATCTCTCATGTGGGAGTGGAAATCCAATTGATGATTGTTGGAGATGTGACAAAAATTGGGAACAAAACAGACAAAGACTAGCAGATTGTGCAATTGGGTTCGGCAAAAACGCGATCGGTGGTAAAAACGGTAAAATTTACGTCGTAACGGATTCCGGCGATGACGATCCCGTGAACCCGAGACCCGGTACAATCCGTTACGCGGTAATTCAAGATGAACCATTATGGATAATTTTTGCAAGAGACATGGTGATTCAACTAAAAGAAGAACTTATAATGAATTCTTTTAAGACAATTGATGGAAGAGGAGCTAGTGTTCATATTGCTGGTGGTCCTTGTATAACAATTCAATATGTAACTAATGTTATAATACATGGTATACATATACATGATTGTAAACAAGGTGGTAATGCTATGGTGAGAGACTCCCCACGGCATTATGGGTGGAGAACAGTATCGGATGGTGATGGTGTGTCTATCTTTGGTGGAAGTCATGTTTGGGTGGATCATTGTTCTTTGTCTAACTGTAATGATGGTTTAATTGATGCAATTCATGGGTCCACTGCAATTACAATTTCTAACAATTACATGACACATCATGATAAAGTCATGCTTTTGGGTCATAGTGATACTTATACTCAAGACAAGAACATGCAAGTCACTATTGCTTTTAATCACTTTGGTGAAGGTCTTGTTCAAAGAATGCCAAGATGTAGGCATGGTTATTTCCATGTGGTGAACAATGACTACACTCACTGGGAAATGTATGCTATTGGAGGAAGTGCTAATCCTACCATCAATAGTCAAGGAAACAGATTTGTTGCCCCCGATGACAGATTCAGCAAAGAGGTGACAAAGCATGAGGATGCACCAGAAGATGAATGGAAGGGATGGAATTGGAGATCAGAAAATGACTTATTGGTAAATGGTGCATTTTTTACAAAATCAGGAGCAGAAGGAGCATCATCAAGCTATGCAAGAGCATCAAGTTTAAGTGCAAGACCATCTTCTCTAGTTGGTACAATAACTACTGGTGCTGGTGTACTCACATGTAGAAAGGGTTCTAGTTGCTGA 1221 0.3989 MTTTLSSLFFLFSLLTFSLISSSPLQDPHLVTQEVNRKINGSLARRNLGYLSCGSGNPIDDCWRCDKNWEQNRQRLADCAIGFGKNAIGGKNGKIYVVTDSGDDDPVNPRPGTIRYAVIQDEPLWIIFARDMVIQLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNVIIHGIHIHDCKQGGNAMVRDSPRHYGWRTVSDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPDDRFSKEVTKHEDAPEDEWKGWNWRSENDLLVNGAFFTKSGAEGASSSYARASSLSARPSSLVGTITTGAGVLTCRKGSSC* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2780 406 PANTHER PECTATE LYASE 18-RELATED 6 403 IPR045032 GO:0030570
Tpr5g2780 406 SUPERFAMILY Pectin lyase-like 34 401 IPR011050 -
Tpr5g2780 406 Pfam Pectate lyase 140 322 IPR002022 -
Tpr5g2780 406 Gene3D - 56 399 IPR012334 -
Tpr5g2780 406 PANTHER PECTATE LYASE 6 403 - -
Tpr5g2780 406 PRINTS Pollen allergen Amb family signature 79 96 IPR018082 -
Tpr5g2780 406 PRINTS Pollen allergen Amb family signature 103 128 IPR018082 -
Tpr5g2780 406 PRINTS Pollen allergen Amb family signature 139 155 IPR018082 -
Tpr5g2780 406 PRINTS Pollen allergen Amb family signature 203 224 IPR018082 -
Tpr5g2780 406 PRINTS Pollen allergen Amb family signature 283 302 IPR018082 -
Tpr5g2780 406 PRINTS Pollen allergen Amb family signature 305 324 IPR018082 -
Tpr5g2780 406 PRINTS Pollen allergen Amb family signature 347 371 IPR018082 -
Tpr5g2780 406 PRINTS Pollen allergen Amb family signature 377 400 IPR018082 -
Tpr5g2780 406 SMART amb_all 131 328 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2780 Tpr-Chr5 49922706 49925361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2780 3 406 Polysaccharide Lyase AT5G63180 80.779 0.0 685
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2780 K01728 - gmx:100779940 734.947